PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.005G190300.2 | ||||||||
Common Name | B456_005G190300, LOC105794740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 25455 Da PI: 8.4838 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.8 | 3.9e-29 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C+++C+++p++ ++q++++ +++k++G++ +l+l++a pe+ r+++++sl+yeA+ r+ +PvyG++g+++++++ Gorai.005G190300.2 4 SCNGCRVLRKGCTENCTIRPCLqwiksSDSQANATLFLAKFYGRAGLLNLIEAGPENLRPAIFRSLLYEACGRVVNPVYGSIGMLWSGNWG 94 6*********************9998777889*********************************************************** PP DUF260 87 leqlkaelallke 99 +q++++++l ++ Gorai.005G190300.2 95 ECQAAVDAVLKGS 107 *****99988765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.596 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.7E-23 | 4 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 232 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCTENCT IRPCLQWIKS SDSQANATLF LAKFYGRAGL LNLIEAGPEN 60 LRPAIFRSLL YEACGRVVNP VYGSIGMLWS GNWGECQAAV DAVLKGSPIT QTSSSLESVE 120 EEQPISPLKT YDIRHVFKDT KPAAAADIDK VKTRTRFKRS RTRSKRQVVD SWMSQLGNGD 180 SKEDESTFSV ETVEGSLVNH AKRAPILKFE DSSNVGLELT LALLPEATHL G* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 160 | 165 | RTRSKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX585561 | 5e-47 | JX585561.1 Gossypium hirsutum clone NBRI_GE19169 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012479498.1 | 1e-173 | PREDICTED: LOB domain-containing protein 42 | ||||
Swissprot | Q9CA30 | 5e-82 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A0D2RP95 | 1e-171 | A0A0D2RP95_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G190300.1 | 1e-172 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68510.1 | 3e-78 | LOB domain-containing protein 42 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.005G190300.2 |
Entrez Gene | 105794740 |
Publications ? help Back to Top | |||
---|---|---|---|
|