PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G190300.1
Common NameB456_005G190300, LOC105794740
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 232aa    MW: 25455 Da    PI: 8.4838
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G190300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.83.9e-294107199
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C+++p++      ++q++++ +++k++G++ +l+l++a pe+ r+++++sl+yeA+ r+ +PvyG++g+++++++ 
  Gorai.005G190300.1   4 SCNGCRVLRKGCTENCTIRPCLqwiksSDSQANATLFLAKFYGRAGLLNLIEAGPENLRPAIFRSLLYEACGRVVNPVYGSIGMLWSGNWG 94 
                         6*********************9998777889*********************************************************** PP

              DUF260  87 leqlkaelallke 99 
                          +q++++++l ++
  Gorai.005G190300.1  95 ECQAAVDAVLKGS 107
                         *****99988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.5963109IPR004883Lateral organ boundaries, LOB
PfamPF031954.7E-234101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCTENCT IRPCLQWIKS SDSQANATLF LAKFYGRAGL LNLIEAGPEN  60
LRPAIFRSLL YEACGRVVNP VYGSIGMLWS GNWGECQAAV DAVLKGSPIT QTSSSLESVE  120
EEQPISPLKT YDIRHVFKDT KPAAAADIDK VKTRTRFKRS RTRSKRQVVD SWMSQLGNGD  180
SKEDESTFSV ETVEGSLVNH AKRAPILKFE DSSNVGLELT LALLPEATHL G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165RTRSKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5855615e-47JX585561.1 Gossypium hirsutum clone NBRI_GE19169 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479498.11e-173PREDICTED: LOB domain-containing protein 42
SwissprotQ9CA305e-82LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A0D2RP951e-171A0A0D2RP95_GOSRA; Uncharacterized protein
STRINGGorai.005G190300.11e-172(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.13e-78LOB domain-containing protein 42
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]