PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G177900.1 | ||||||||
Common Name | B456_005G177900, LOC105794608 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 416aa MW: 45271 Da PI: 6.9485 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.6 | 2.6e-17 | 63 | 112 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp+ + r +lg+f+taeeAa a++ a+++++g Gorai.005G177900.1 63 RYRGVRRRP-WGRYAAEIRDPR----SkERRWLGTFDTAEEAACAYDCAARAMRG 112 59*******.**********84....25999**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.4E-11 | 63 | 112 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-32 | 63 | 128 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.115 | 63 | 120 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.58E-30 | 63 | 119 | No hit | No description |
SuperFamily | SSF54171 | 5.43E-21 | 63 | 120 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-29 | 63 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 64 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 86 | 102 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MEEAFKTLSG ITFVPDPDPR DSIADHPNKC AASTTTAVTP TTSNTPTNKR SLKENGGSGG 60 TMRYRGVRRR PWGRYAAEIR DPRSKERRWL GTFDTAEEAA CAYDCAARAM RGIKARTNFV 120 YPATEPHSAN DHFLPPFSFS KQSQSSIRDL NCIRHQFGQS SNWPPFASPH AGDFSGGGSS 180 TQRNASLNMI LFRDLLNSSS NSSLHAPPHQ SLPDHFSFTN GTCASSFPFT FSSNSSVLPG 240 GSLLNSSINN TSPRASDSIS DSFTGSTMTL PLKESNSSHA TVAPTTDDME FFPQEPSDSG 300 LLQEVIQGFL PKPSSKKQDV SATTTNCTYH SISPPVNEMT LGQSLSGLKK EPLGFYVDYN 360 NQAVPQQFES FNRTTAVHYA NEIPAKHLQV GQDMLDDIFQ YPELMSVLAA RVQNG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-20 | 63 | 130 | 14 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012479316.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR2-like | ||||
TrEMBL | A0A0D2PUS1 | 0.0 | A0A0D2PUS1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G177900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7355 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 1e-13 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G177900.1 |
Entrez Gene | 105794608 |
Publications ? help Back to Top | |||
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