PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G173300.2 | ||||||||
Common Name | B456_005G173300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARR-B | ||||||||
Protein Properties | Length: 527aa MW: 58865.7 Da PI: 5.1789 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 71.7 | 1.1e-22 | 202 | 254 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt +LH++Fv+av+q+ G + Pk+il+lm+v+ Lt+e+v+SHLQkYRl Gorai.005G173300.2 202 KARVVWTVDLHQKFVKAVNQI-GFD-IGPKKILDLMNVPWLTRENVASHLQKYRL 254 68*******************.777.78**************************8 PP | |||||||
2 | Response_reg | 83.5 | 6.3e-28 | 22 | 130 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl+vdD+p+ +++l+++l+k y ev+++ ++eal+ll+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + Gorai.005G173300.2 22 VLVVDDDPTWLKILEKMLKKCSY-EVTTCCLAREALNLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKG 110 89*********************.***************999999**********************6644.8****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 ++ Ga d+l Kp+ ++el++ Gorai.005G173300.2 111 VQHGACDYLLKPIRMKELRN 130 *****************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 1.3E-44 | 19 | 165 | No hit | No description |
SuperFamily | SSF52172 | 6.12E-36 | 19 | 144 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.4E-32 | 20 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.312 | 21 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.9E-25 | 22 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.87E-29 | 23 | 136 | No hit | No description |
SuperFamily | SSF46689 | 5.64E-16 | 200 | 258 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.7E-26 | 200 | 259 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-20 | 202 | 254 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.6E-8 | 204 | 253 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MVLAESGFSS PRNDAFPAGL RVLVVDDDPT WLKILEKMLK KCSYEVTTCC LAREALNLLR 60 ERKDGYDIVI SDVNMPDMDG FKLLEHVGLE MDLPVIMMSV DGETSRVMKG VQHGACDYLL 120 KPIRMKELRN IWQHVFRKKI HEVRDIESLE GFESIQMTRS GYDLFDDGHF LSGDDTTSGR 180 KRKDADNKHD DRELSDPSST KKARVVWTVD LHQKFVKAVN QIGFDIGPKK ILDLMNVPWL 240 TRENVASHLQ KYRLYLSRLQ KESDIKNSFI GMKHSDLPSK DSTASFGPHK AMNMIPDDVP 300 NGTYSFSASN SLAQNVDLKG QGDLKGITSA PVAEPKGALS IDIHDSHEAK STQMSFDHSL 360 GSVDSAVSFA SFNSTTPLQY PWTEIPEIQF KQECEPLHLE NGFSQLPLPG PSMIENEANR 420 SRIEVKPLLD ECRSNFVEHL GPVGAEDLFP IQSKSQSLNN QVFDLISATK SSMKTQDVGL 480 NYLADSEFAL RNLNASGVGV PLATLSEDLQ ICWLQEYYAI DQGLFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-16 | 198 | 259 | 1 | 63 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ524920 | 3e-72 | HQ524920.1 Gossypium herbaceum clone NBRI_C_EYT27PB01BJGHL simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012479245.1 | 0.0 | PREDICTED: two-component response regulator ARR11 | ||||
Swissprot | Q5N6V8 | 1e-140 | ORR26_ORYSJ; Two-component response regulator ORR26 | ||||
TrEMBL | A0A0D2RGX0 | 0.0 | A0A0D2RGX0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G173300.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-130 | response regulator 11 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G173300.2 |
Publications ? help Back to Top | |||
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