PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G166500.1 | ||||||||
Common Name | B456_005G166500, LOC105794493 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SBP | ||||||||
Protein Properties | Length: 475aa MW: 52274.3 Da PI: 8.1139 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.7 | 1.2e-41 | 182 | 259 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+ak+yhr+h+vCe hsk+p+v+v gle rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+ Gorai.005G166500.1 182 RCQVEGCNLDLSSAKDYHRKHRVCESHSKSPKVIVGGLELRFCQQCSRFHALSEFDEKKRSCRRRLSDHNARRRKPQT 259 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.1E-33 | 176 | 244 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.599 | 180 | 257 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.08E-39 | 181 | 263 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-32 | 183 | 256 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MDWNAKTPLQ WEWENLMMLN ATPTEIPRKL RSAEWDIEGE EELDSGSLYS SGAAAGGSGG 60 SGSDLGLISL SKSSKSASIN SSSAGEVKVT TFTLEAFEAI PHEISNKKKV SKVEHTGSSP 120 IFEASVGSGE PLLSLKLGKQ TYFEDVCTGS NSKTSSYSAT PGPSPSPAKR SKPNCQTKHI 180 LRCQVEGCNL DLSSAKDYHR KHRVCESHSK SPKVIVGGLE LRFCQQCSRF HALSEFDEKK 240 RSCRRRLSDH NARRRKPQTD AIHFSAARPS QAAYDGKQLM SFVWNKVPFL HNARPNENFT 300 REGTFVSKSS ETKVYAPTKA GNANGQLQLP GSQLLNSMTS RCYDSNRFLP VKGKQNTVEV 360 LNQGVEESTV ASNMGTTQDL HRALSLLSNE SWVSCEPKQH GSLAYPVHVS GSSMSQPTMN 420 VISQSFPIPY ALSENWQMEQ EQTTQSQVEG DNHLQEFQLL KAPYDNSFYS NQMN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-27 | 183 | 256 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 238 | 255 | KKRSCRRRLSDHNARRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ622328 | 0.0 | KJ622328.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL20) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012479133.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_012479134.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_012479135.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_012479136.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
TrEMBL | A0A0D2PU46 | 0.0 | A0A0D2PU46_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G166500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6562 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 1e-78 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G166500.1 |
Entrez Gene | 105794493 |
Publications ? help Back to Top | |||
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