PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G164600.2 | ||||||||
Common Name | B456_005G164600, LOC105794471 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SBP | ||||||||
Protein Properties | Length: 310aa MW: 33477.4 Da PI: 10.3504 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.6 | 1.3e-41 | 25 | 101 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvCevhsk+p+v ++g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+ Gorai.005G164600.2 25 CLVDGCTADLSKCRDYHRRHKVCEVHSKTPKVSIRGQEQRFCQQCSRFHSLVEFDEGKRSCRKRLDGHNRRRRKPQP 101 **************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.1E-35 | 18 | 86 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.274 | 22 | 99 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.54E-39 | 23 | 104 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.3E-30 | 25 | 98 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MESAPSSASF KRARPPGSGN QVPSCLVDGC TADLSKCRDY HRRHKVCEVH SKTPKVSIRG 60 QEQRFCQQCS RFHSLVEFDE GKRSCRKRLD GHNRRRRKPQ PNALTVNSGS LLSNPPGSRY 120 LLFSSPQIFS TTSMTDSSTG AVKVKTDISS SLNFSSRNSS FVGASSLNYK GERQFSFLQS 180 ANSSHPGVSV CQPLVNGNPS SSNGGISQKM LLNGLNRTVE SNRALSLLSS QPAETREISL 240 SPMVQSGSTS SLIPNLQYKG LGMEGEQVGT ILATDQITNT DLHGNGVFRI GHPGSSASGT 300 HHRLTFSWE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-30 | 25 | 98 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 98 | KRSCRKRLDGHNRRRRKP |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Strongly expressed in immature ears and weakly in husks. Found in the inflorescence meristem of the developing ear, in the spikelet pair primordia, the glume primordia, the cupule forming region and other floral organs. Not detected in other tissues. {ECO:0000250|UniProtKB:Q49I55}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | SBP transcriptional regulator probably involved in the domestication of maize. Acts as a transcriptional repressor binding to a 5'-GTAC-3' motif. May repress the growth of lateral branches in length and numbers. {ECO:0000250|UniProtKB:Q49I55}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ622329 | 0.0 | KJ622329.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL21) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012479105.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_012479106.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_012479107.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_012479108.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_012479109.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Swissprot | Q49I57 | 7e-61 | TGA1B_MAIZE; Teosinte glume architecture 1 | ||||
TrEMBL | A0A0D2SI93 | 0.0 | A0A0D2SI93_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G164600.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 5e-50 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G164600.2 |
Entrez Gene | 105794471 |
Publications ? help Back to Top | |||
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