PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G158800.3

Common Name

B456_005G158800, LOC105794392

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 475aa MW: 52232.3 Da PI: 5.2747

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G158800.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	121	143	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg s+++ ++ H t+ Gorai.005G158800.3 121 FECPICGASYRSEEEVSIHVETC 143 89*****************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd09212	7.63E-14	176	234	No hit	No description
SuperFamily	SSF143503	1.83E-17	187	250	IPR018997	PUB domain
SMART	SM00580	1.5E-19	188	255	IPR018997	PUB domain
Pfam	PF09409	6.5E-16	188	261	IPR018997	PUB domain
SuperFamily	SSF54236	4.65E-13	335	449	IPR029071	Ubiquitin-related domain
PROSITE profile	PS50033	11.631	364	448	IPR001012	UBX domain
Gene3D	G3DSA:3.10.20.90	2.7E-7	364	447	No hit	No description
Pfam	PF00789	5.6E-5	365	414	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MSEMKDKLKG FMKKVNTQFS SSSSSSGKFK GQGRVLGSSS SSGPVNPILT RPSPIPNPAP 60 SSSSSNSKPV LPSKPPVSDQ NKPSSNSNPE PNHKTGSGFD PYDSFITSSK VSKNGFTLNV 120 FECPICGASY RSEEEVSIHV ETCVNNTNSL DRKGTDDESG SNETALEESR GEVEVRVSSF 180 LSGKPAEGSI EVVLKLLRNI VKEPGNDKFR KLRMSNPKIR EAIGEVAGGV ELLEFVGFEL 240 EEEGGEMWAV MDVPKEEQIS VISKAIMLLE PGNMEKFKKS ENISPTASPE KEETVESKKI 300 DRKIRVFFSV PESVAAKIEL PDSFYNLSSE ELKREAEMRK KKIADSQLLI PKSYKEKQAK 360 AARRKYRRTI IRIQFPDGVV LQGEFAPWEP TSALYEFVSS ALKEPCLEFE LLDPVIVKLR 420 VIPSFPAAGE KGRTLEEEDL VPSALIRFKP VETDSVVFTG LSNELLEISE PLVN*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MSEMKDKLKG FMKKVNTQFS SSSSSSGKFK GQGRVLGSSS SSGPVNPILT RPSPIPNPAP  60
SSSSSNSKPV LPSKPPVSDQ NKPSSNSNPE PNHKTGSGFD PYDSFITSSK VSKNGFTLNV  120
FECPICGASY RSEEEVSIHV ETCVNNTNSL DRKGTDDESG SNETALEESR GEVEVRVSSF  180
LSGKPAEGSI EVVLKLLRNI VKEPGNDKFR KLRMSNPKIR EAIGEVAGGV ELLEFVGFEL  240
EEEGGEMWAV MDVPKEEQIS VISKAIMLLE PGNMEKFKKS ENISPTASPE KEETVESKKI  300
DRKIRVFFSV PESVAAKIEL PDSFYNLSSE ELKREAEMRK KKIADSQLLI PKSYKEKQAK  360
AARRKYRRTI IRIQFPDGVV LQGEFAPWEP TSALYEFVSS ALKEPCLEFE LLDPVIVKLR  420
VIPSFPAAGE KGRTLEEEDL VPSALIRFKP VETDSVVFTG LSNELLEISE PLVN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifw_A	1e-11	319	448	23	146	Tether containing UBX domain for GLUT4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012479004.1	0.0	PREDICTED: plant UBX domain-containing protein 2-like isoform X1
Refseq	XP_012479005.1	0.0	PREDICTED: plant UBX domain-containing protein 2-like isoform X1
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	A0A0D2RMC8	0.0	A0A0D2RMC8_GOSRA; Uncharacterized protein
STRING	Gorai.005G158800.1	0.0	(Gossypium raimondii)

Link Out ? help Back to Top
Phytozome	Gorai.005G158800.3
Entrez Gene	105794392

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]