PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G150100.6

Common Name

B456_005G150100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 611aa MW: 67869.9 Da PI: 6.4665

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G150100.6	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.1	4e-20	98	153	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+ qVk+WFqN+R+++k Gorai.005G150100.6 98 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 153 688999***********************************************999 PP
2	START	221.4	2.8e-69	281	501	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 ela +a++elv++a+++ep+W++s ++n++e++++f+++ + ++ ea+++++vv+m++ +lve+l+d++ qW++ + k Gorai.005G150100.6 281 ELAVAAMEELVRMAQVGEPLWMTSLdgttCMLNEEEYIRTFPSGIGpkptgFKCEASKETTVVIMNHINLVEILMDVN-QWSTLFSgivsK 370 57899******************99999*******99999****************************.******** PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 a+tl+v+s+g galq+m+ae+q+lsplvp R++++vRy++q+ +g+w++vdvS+d ++ p+ vR++++pSg+li++++ng+s Gorai.005G150100.6 371 ASTLDVLSTGvagnynGALQVMTAEFQVLSPLVPtRESYYVRYCKQHAEGTWAVVDVSLDTIRPSPT----VRCRRRPSGCLIQEMPNGYS 457 ************************************************************996....**************** PP EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 kvtwvehv++++ +h+l+++lv+sg+a+ga++wv+tl+rqce+ Gorai.005G150100.6 458 KVTWVEHVEVDDGGVHNLYKQLVSSGHAFGARRWVSTLDRQCER 501 ****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-22	76	153	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.72E-19	84	155	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.682	95	155	IPR001356	Homeobox domain
SMART	SM00389	4.0E-19	96	159	IPR001356	Homeobox domain
CDD	cd00086	1.60E-18	98	156	No hit	No description
Pfam	PF00046	8.8E-18	98	153	IPR001356	Homeobox domain
PROSITE profile	PS50848	45.382	272	504	IPR002913	START domain
SuperFamily	SSF55961	7.91E-36	274	503	No hit	No description
CDD	cd08875	2.90E-130	276	500	No hit	No description
SMART	SM00234	5.9E-66	281	501	IPR002913	START domain
Pfam	PF01852	9.2E-59	282	501	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	4.4E-6	370	467	IPR023393	START-like domain
SuperFamily	SSF55961	8.13E-9	521	607	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence Send to blast
MPAGVMIPAR NMPSMITGNG SVSGYGTSSG LTLGQIMFQQ PNNVMEGQLH PLEMTQNASE 60 SEIARMRDEE FDSTNKSGSE NHELGGSGDD QDPRPNKKKR YHRHTQHQIQ EMEAFFKECP 120 HPDDKQRKEL GRELGLEPLQ VKFWFQNKRT QMKTQHERHE NTQLRTENEK LRADNMRYRE 180 ALSTASCPNC GGPTAVGQMS FDEHHLRLEN SRLREEIDRI SAIAAKYVGK PVVNFPLLSS 240 PAPPRPFDFG SQPVTEEMYG VGDLLRSISA PSEADKPMII ELAVAAMEEL VRMAQVGEPL 300 WMTSLDGTTC MLNEEEYIRT FPSGIGPKPT GFKCEASKET TVVIMNHINL VEILMDVNQW 360 STLFSGIVSK ASTLDVLSTG VAGNYNGALQ VMTAEFQVLS PLVPTRESYY VRYCKQHAEG 420 TWAVVDVSLD TIRPSPTVRC RRRPSGCLIQ EMPNGYSKVT WVEHVEVDDG GVHNLYKQLV 480 SSGHAFGARR WVSTLDRQCE RLASLMASNI PTGDVGVITN QDGRKSMLKL AERMVISFCG 540 GVSASTAHTW TTLSGTGADD VRVMTRKSVD DPGRPPGIVL SAATSFWLPV SPKRVFDFLR 600 DEHSRSEVVY *

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence Send to blast

MPAGVMIPAR NMPSMITGNG SVSGYGTSSG LTLGQIMFQQ PNNVMEGQLH PLEMTQNASE  60
SEIARMRDEE FDSTNKSGSE NHELGGSGDD QDPRPNKKKR YHRHTQHQIQ EMEAFFKECP  120
HPDDKQRKEL GRELGLEPLQ VKFWFQNKRT QMKTQHERHE NTQLRTENEK LRADNMRYRE  180
ALSTASCPNC GGPTAVGQMS FDEHHLRLEN SRLREEIDRI SAIAAKYVGK PVVNFPLLSS  240
PAPPRPFDFG SQPVTEEMYG VGDLLRSISA PSEADKPMII ELAVAAMEEL VRMAQVGEPL  300
WMTSLDGTTC MLNEEEYIRT FPSGIGPKPT GFKCEASKET TVVIMNHINL VEILMDVNQW  360
STLFSGIVSK ASTLDVLSTG VAGNYNGALQ VMTAEFQVLS PLVPTRESYY VRYCKQHAEG  420
TWAVVDVSLD TIRPSPTVRC RRRPSGCLIQ EMPNGYSKVT WVEHVEVDDG GVHNLYKQLV  480
SSGHAFGARR WVSTLDRQCE RLASLMASNI PTGDVGVITN QDGRKSMLKL AERMVISFCG  540
GVSASTAHTW TTLSGTGADD VRVMTRKSVD DPGRPPGIVL SAATSFWLPV SPKRVFDFLR  600
DEHSRSEVVY *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269\|PubMed:16778018}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012478851.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
Refseq	XP_012478852.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
Refseq	XP_012478853.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
Refseq	XP_012478854.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
Swissprot	Q0J9X2	0.0	ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
Swissprot	Q94C37	0.0	HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBL	A0A0D2RFJ4	0.0	A0A0D2RFJ4_GOSRA; Uncharacterized protein
STRING	Gorai.005G150100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05230.3	0.0	homeodomain GLABROUS 2

Link Out ? help Back to Top
Phytozome	Gorai.005G150100.6

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]