PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G150100.5
Common NameB456_005G150100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 755aa    MW: 82373.3 Da    PI: 5.6283
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G150100.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.3e-2093148156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  Gorai.005G150100.5  93 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 148
                         688999***********************************************999 PP
2START211.92.4e-662764941206
                         HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG.CT-TT-SEEEE CS
               START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke.qWdetlakaet 81 
                         ela +a++elv++a+++ep+W++s      ++n++e++++f+++ +     ++ ea+++++vv+m++ +lve+l+d+    ++  + ka+t
  Gorai.005G150100.5 276 ELAVAAMEELVRMAQVGEPLWMTSLdgttCMLNEEEYIRTFPSGIGpkptgFKCEASKETTVVIMNHINLVEILMDVWStLFSGIVSKAST 366
                         57899********************99999***********99999******************************99999999999**** PP

                         EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS
               START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165
                         l+v+s+g      galq+m+ae+q+lsplvp R++++vRy++q+ +g+w++vdvS+d  ++ p+    vR++++pSg+li++++ng+skvt
  Gorai.005G150100.5 367 LDVLSTGvagnynGALQVMTAEFQVLSPLVPtRESYYVRYCKQHAEGTWAVVDVSLDTIRPSPT----VRCRRRPSGCLIQEMPNGYSKVT 453
                         *************************************************************996....*********************** PP

                         EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         wvehv++++  +h+l+++lv+sg+a+ga++wv+tl+rqce+
  Gorai.005G150100.5 454 WVEHVEVDDGGVHNLYKQLVSSGHAFGARRWVSTLDRQCER 494
                         ***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-2271148IPR009057Homeodomain-like
SuperFamilySSF466893.68E-1979150IPR009057Homeodomain-like
PROSITE profilePS5007116.68290150IPR001356Homeobox domain
SMARTSM003894.0E-1991154IPR001356Homeobox domain
PfamPF000461.2E-1793148IPR001356Homeobox domain
CDDcd000861.56E-1893151No hitNo description
PROSITE profilePS5084841.315267497IPR002913START domain
SuperFamilySSF559617.56E-33269496No hitNo description
CDDcd088751.53E-125271493No hitNo description
SMARTSM002344.8E-61276494IPR002913START domain
PfamPF018524.7E-55277494IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-5370460IPR023393START-like domain
SuperFamilySSF559616.05E-24514746No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MPAGVMIPAR NMPSMITGNG SVSGYGTSSG LTLGQPNNVM EGQLHPLEMT QNASESEIAR  60
MRDEEFDSTN KSGSENHELG GSGDDQDPRP NKKKRYHRHT QHQIQEMEAF FKECPHPDDK  120
QRKELGRELG LEPLQVKFWF QNKRTQMKTQ HERHENTQLR TENEKLRADN MRYREALSTA  180
SCPNCGGPTA VGQMSFDEHH LRLENSRLRE EIDRISAIAA KYVGKPVVNF PLLSSPAPPR  240
PFDFGSQPVT EEMYGVGDLL RSISAPSEAD KPMIIELAVA AMEELVRMAQ VGEPLWMTSL  300
DGTTCMLNEE EYIRTFPSGI GPKPTGFKCE ASKETTVVIM NHINLVEILM DVWSTLFSGI  360
VSKASTLDVL STGVAGNYNG ALQVMTAEFQ VLSPLVPTRE SYYVRYCKQH AEGTWAVVDV  420
SLDTIRPSPT VRCRRRPSGC LIQEMPNGYS KVTWVEHVEV DDGGVHNLYK QLVSSGHAFG  480
ARRWVSTLDR QCERLASLMA SNIPTGDVGV ITNQDGRKSM LKLAERMVIS FCGGVSASTA  540
HTWTTLSGTG ADDVRVMTRK SVDDPGRPPG IVLSAATSFW LPVSPKRVFD FLRDEHSRSE  600
WDILSNGGAV QEMAHIANGR DPGNCVSLLR VNSANSSQSN MLILQESCTD PTASFVIYAP  660
VDIVAMNVVL NGGDPDYVAL LPSGFAILPD GMTVTDVGMA DSGGSSGSLL TVAFQILVDS  720
VPTAKLSLGS VATVNNLIAC TVERIKASLS CDNA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478856.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X3
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0D2SHD20.0A0A0D2SHD2_GOSRA; Uncharacterized protein
STRINGGorai.005G150100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]