PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G150100.4
Common NameB456_005G150100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 756aa    MW: 82501.4 Da    PI: 5.6283
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G150100.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.3e-2094149156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  Gorai.005G150100.4  94 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 149
                         688999***********************************************999 PP
2START211.92.4e-662774951206
                         HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG.CT-TT-SEEEE CS
               START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke.qWdetlakaet 81 
                         ela +a++elv++a+++ep+W++s      ++n++e++++f+++ +     ++ ea+++++vv+m++ +lve+l+d+    ++  + ka+t
  Gorai.005G150100.4 277 ELAVAAMEELVRMAQVGEPLWMTSLdgttCMLNEEEYIRTFPSGIGpkptgFKCEASKETTVVIMNHINLVEILMDVWStLFSGIVSKAST 367
                         57899********************99999***********99999******************************99999999999**** PP

                         EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS
               START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165
                         l+v+s+g      galq+m+ae+q+lsplvp R++++vRy++q+ +g+w++vdvS+d  ++ p+    vR++++pSg+li++++ng+skvt
  Gorai.005G150100.4 368 LDVLSTGvagnynGALQVMTAEFQVLSPLVPtRESYYVRYCKQHAEGTWAVVDVSLDTIRPSPT----VRCRRRPSGCLIQEMPNGYSKVT 454
                         *************************************************************996....*********************** PP

                         EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         wvehv++++  +h+l+++lv+sg+a+ga++wv+tl+rqce+
  Gorai.005G150100.4 455 WVEHVEVDDGGVHNLYKQLVSSGHAFGARRWVSTLDRQCER 495
                         ***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-2272149IPR009057Homeodomain-like
SuperFamilySSF466893.68E-1980151IPR009057Homeodomain-like
PROSITE profilePS5007116.68291151IPR001356Homeobox domain
SMARTSM003894.0E-1992155IPR001356Homeobox domain
CDDcd000861.57E-1894152No hitNo description
PfamPF000461.2E-1794149IPR001356Homeobox domain
PROSITE profilePS5084841.315268498IPR002913START domain
SuperFamilySSF559617.56E-33270497No hitNo description
CDDcd088751.49E-125272494No hitNo description
SMARTSM002344.8E-61277495IPR002913START domain
PfamPF018524.8E-55278495IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-5371461IPR023393START-like domain
SuperFamilySSF559616.05E-24515747No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MPAGVMIPAR NMPSMITGNG SVSGYGTSSG LTLGQQPNNV MEGQLHPLEM TQNASESEIA  60
RMRDEEFDST NKSGSENHEL GGSGDDQDPR PNKKKRYHRH TQHQIQEMEA FFKECPHPDD  120
KQRKELGREL GLEPLQVKFW FQNKRTQMKT QHERHENTQL RTENEKLRAD NMRYREALST  180
ASCPNCGGPT AVGQMSFDEH HLRLENSRLR EEIDRISAIA AKYVGKPVVN FPLLSSPAPP  240
RPFDFGSQPV TEEMYGVGDL LRSISAPSEA DKPMIIELAV AAMEELVRMA QVGEPLWMTS  300
LDGTTCMLNE EEYIRTFPSG IGPKPTGFKC EASKETTVVI MNHINLVEIL MDVWSTLFSG  360
IVSKASTLDV LSTGVAGNYN GALQVMTAEF QVLSPLVPTR ESYYVRYCKQ HAEGTWAVVD  420
VSLDTIRPSP TVRCRRRPSG CLIQEMPNGY SKVTWVEHVE VDDGGVHNLY KQLVSSGHAF  480
GARRWVSTLD RQCERLASLM ASNIPTGDVG VITNQDGRKS MLKLAERMVI SFCGGVSAST  540
AHTWTTLSGT GADDVRVMTR KSVDDPGRPP GIVLSAATSF WLPVSPKRVF DFLRDEHSRS  600
EWDILSNGGA VQEMAHIANG RDPGNCVSLL RVNSANSSQS NMLILQESCT DPTASFVIYA  660
PVDIVAMNVV LNGGDPDYVA LLPSGFAILP DGMTVTDVGM ADSGGSSGSL LTVAFQILVD  720
SVPTAKLSLG SVATVNNLIA CTVERIKASL SCDNA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478855.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0D2RLV70.0A0A0D2RLV7_GOSRA; Uncharacterized protein
STRINGGorai.005G150100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]