PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G150100.3
Common NameB456_005G150100, LOC105794291
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 757aa    MW: 82615.5 Da    PI: 5.6283
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G150100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.3e-2093148156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  Gorai.005G150100.3  93 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 148
                         688999***********************************************999 PP
2START220.84.3e-692764961206
                         HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
               START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                         ela +a++elv++a+++ep+W++s      ++n++e++++f+++ +     ++ ea+++++vv+m++ +lve+l+d++ qW++ +     k
  Gorai.005G150100.3 276 ELAVAAMEELVRMAQVGEPLWMTSLdgttCMLNEEEYIRTFPSGIGpkptgFKCEASKETTVVIMNHINLVEILMDVN-QWSTLFSgivsK 365
                         57899********************99999***********99999********************************.************ PP

                         EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
               START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                         a+tl+v+s+g      galq+m+ae+q+lsplvp R++++vRy++q+ +g+w++vdvS+d  ++ p+    vR++++pSg+li++++ng+s
  Gorai.005G150100.3 366 ASTLDVLSTGvagnynGALQVMTAEFQVLSPLVPtRESYYVRYCKQHAEGTWAVVDVSLDTIRPSPT----VRCRRRPSGCLIQEMPNGYS 452
                         ****************************************************************996....******************** PP

                         EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         kvtwvehv++++  +h+l+++lv+sg+a+ga++wv+tl+rqce+
  Gorai.005G150100.3 453 KVTWVEHVEVDDGGVHNLYKQLVSSGHAFGARRWVSTLDRQCER 496
                         ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-2271148IPR009057Homeodomain-like
SuperFamilySSF466893.68E-1979150IPR009057Homeodomain-like
PROSITE profilePS5007116.68290150IPR001356Homeobox domain
SMARTSM003894.0E-1991154IPR001356Homeobox domain
PfamPF000461.2E-1793148IPR001356Homeobox domain
CDDcd000861.57E-1893151No hitNo description
PROSITE profilePS5084845.382267499IPR002913START domain
SuperFamilySSF559616.72E-36269498No hitNo description
CDDcd088751.14E-128271495No hitNo description
SMARTSM002345.9E-66276496IPR002913START domain
PfamPF018521.4E-58277496IPR002913START domain
Gene3DG3DSA:3.30.530.206.3E-6365462IPR023393START-like domain
SuperFamilySSF559615.5E-24516748No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MPAGVMIPAR NMPSMITGNG SVSGYGTSSG LTLGQPNNVM EGQLHPLEMT QNASESEIAR  60
MRDEEFDSTN KSGSENHELG GSGDDQDPRP NKKKRYHRHT QHQIQEMEAF FKECPHPDDK  120
QRKELGRELG LEPLQVKFWF QNKRTQMKTQ HERHENTQLR TENEKLRADN MRYREALSTA  180
SCPNCGGPTA VGQMSFDEHH LRLENSRLRE EIDRISAIAA KYVGKPVVNF PLLSSPAPPR  240
PFDFGSQPVT EEMYGVGDLL RSISAPSEAD KPMIIELAVA AMEELVRMAQ VGEPLWMTSL  300
DGTTCMLNEE EYIRTFPSGI GPKPTGFKCE ASKETTVVIM NHINLVEILM DVNQWSTLFS  360
GIVSKASTLD VLSTGVAGNY NGALQVMTAE FQVLSPLVPT RESYYVRYCK QHAEGTWAVV  420
DVSLDTIRPS PTVRCRRRPS GCLIQEMPNG YSKVTWVEHV EVDDGGVHNL YKQLVSSGHA  480
FGARRWVSTL DRQCERLASL MASNIPTGDV GVITNQDGRK SMLKLAERMV ISFCGGVSAS  540
TAHTWTTLSG TGADDVRVMT RKSVDDPGRP PGIVLSAATS FWLPVSPKRV FDFLRDEHSR  600
SEWDILSNGG AVQEMAHIAN GRDPGNCVSL LRVNSANSSQ SNMLILQESC TDPTASFVIY  660
APVDIVAMNV VLNGGDPDYV ALLPSGFAIL PDGMTVTDVG MADSGGSSGS LLTVAFQILV  720
DSVPTAKLSL GSVATVNNLI ACTVERIKAS LSCDNA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478856.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X3
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0D2ND460.0A0A0D2ND46_GOSRA; Uncharacterized protein
STRINGGorai.005G150100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]