PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G150100.2 | ||||||||
Common Name | B456_005G150100, LOC105794291 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 758aa MW: 82743.6 Da PI: 5.6283 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.7 | 5.3e-20 | 94 | 149 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+ qVk+WFqN+R+++k Gorai.005G150100.2 94 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 149 688999***********************************************999 PP | |||||||
2 | START | 220.8 | 4.4e-69 | 277 | 497 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 ela +a++elv++a+++ep+W++s ++n++e++++f+++ + ++ ea+++++vv+m++ +lve+l+d++ qW++ + k Gorai.005G150100.2 277 ELAVAAMEELVRMAQVGEPLWMTSLdgttCMLNEEEYIRTFPSGIGpkptgFKCEASKETTVVIMNHINLVEILMDVN-QWSTLFSgivsK 366 57899********************99999***********99999********************************.************ PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 a+tl+v+s+g galq+m+ae+q+lsplvp R++++vRy++q+ +g+w++vdvS+d ++ p+ vR++++pSg+li++++ng+s Gorai.005G150100.2 367 ASTLDVLSTGvagnynGALQVMTAEFQVLSPLVPtRESYYVRYCKQHAEGTWAVVDVSLDTIRPSPT----VRCRRRPSGCLIQEMPNGYS 453 ****************************************************************996....******************** PP EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 kvtwvehv++++ +h+l+++lv+sg+a+ga++wv+tl+rqce+ Gorai.005G150100.2 454 KVTWVEHVEVDDGGVHNLYKQLVSSGHAFGARRWVSTLDRQCER 497 ******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 72 | 149 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.68E-19 | 80 | 151 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.682 | 91 | 151 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.0E-19 | 92 | 155 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.58E-18 | 94 | 152 | No hit | No description |
Pfam | PF00046 | 1.2E-17 | 94 | 149 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 45.382 | 268 | 500 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.72E-36 | 270 | 499 | No hit | No description |
CDD | cd08875 | 1.11E-128 | 272 | 496 | No hit | No description |
SMART | SM00234 | 5.9E-66 | 277 | 497 | IPR002913 | START domain |
Pfam | PF01852 | 1.4E-58 | 278 | 497 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 6.3E-6 | 366 | 463 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 5.5E-24 | 517 | 749 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 758 aa Download sequence Send to blast |
MPAGVMIPAR NMPSMITGNG SVSGYGTSSG LTLGQQPNNV MEGQLHPLEM TQNASESEIA 60 RMRDEEFDST NKSGSENHEL GGSGDDQDPR PNKKKRYHRH TQHQIQEMEA FFKECPHPDD 120 KQRKELGREL GLEPLQVKFW FQNKRTQMKT QHERHENTQL RTENEKLRAD NMRYREALST 180 ASCPNCGGPT AVGQMSFDEH HLRLENSRLR EEIDRISAIA AKYVGKPVVN FPLLSSPAPP 240 RPFDFGSQPV TEEMYGVGDL LRSISAPSEA DKPMIIELAV AAMEELVRMA QVGEPLWMTS 300 LDGTTCMLNE EEYIRTFPSG IGPKPTGFKC EASKETTVVI MNHINLVEIL MDVNQWSTLF 360 SGIVSKASTL DVLSTGVAGN YNGALQVMTA EFQVLSPLVP TRESYYVRYC KQHAEGTWAV 420 VDVSLDTIRP SPTVRCRRRP SGCLIQEMPN GYSKVTWVEH VEVDDGGVHN LYKQLVSSGH 480 AFGARRWVST LDRQCERLAS LMASNIPTGD VGVITNQDGR KSMLKLAERM VISFCGGVSA 540 STAHTWTTLS GTGADDVRVM TRKSVDDPGR PPGIVLSAAT SFWLPVSPKR VFDFLRDEHS 600 RSEWDILSNG GAVQEMAHIA NGRDPGNCVS LLRVNSANSS QSNMLILQES CTDPTASFVI 660 YAPVDIVAMN VVLNGGDPDY VALLPSGFAI LPDGMTVTDV GMADSGGSSG SLLTVAFQIL 720 VDSVPTAKLS LGSVATVNNL IACTVERIKA SLSCDNA* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012478855.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X2 | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | A0A0D2RFI9 | 0.0 | A0A0D2RFI9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G150100.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G150100.2 |
Entrez Gene | 105794291 |
Publications ? help Back to Top | |||
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