PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G148600.1
Common NameB456_005G148600, LOC105794274
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 195aa    MW: 22260.1 Da    PI: 6.5106
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G148600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.73.4e-1582131554
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                         +++rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L+++l++ ++
  Gorai.005G148600.1  82 RKQRRMISNRESARRSRMRKQKHLDELWSQVIRLRNENHSLIDKLNHVSE 131
                         79*******************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-1678142IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.65780131IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.57E-1382131No hitNo description
Gene3DG3DSA:1.20.5.1701.9E-1382155No hitNo description
PfamPF001709.8E-1382131IPR004827Basic-leucine zipper domain
CDDcd147023.14E-2083134No hitNo description
PROSITE patternPS00036085100IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MAPGELAGLH YLAPENPILN PANLGMMQNT IPAFHFNRFL NSLPNFNILP PAHEFTAQSS  60
SISNYSTSDE AEEHQVNIID ERKQRRMISN RESARRSRMR KQKHLDELWS QVIRLRNENH  120
SLIDKLNHVS ECHDLVLQEN AKLKEEASDL RQMLTDLKIG SPYLKELEEV PCNTAHLRAE  180
STNQSIANSV DFLH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194101RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478829.11e-142PREDICTED: basic leucine zipper 43
SwissprotQ9FMC22e-35BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A0D2RFH81e-141A0A0D2RFH8_GOSRA; Uncharacterized protein
TrEMBLA0A2P5R5X71e-141A0A2P5R5X7_GOSBA; Uncharacterized protein
STRINGGorai.005G148600.11e-142(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28922469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13600.17e-48basic leucine-zipper 58
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]