PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G148300.7

Common Name

B456_005G148300, LOC105794272

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 527aa MW: 56436.1 Da PI: 6.0864

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G148300.7	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.4e-09	367	415	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Gorai.005G148300.7 367 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 415 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.67E-17	362	433	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.92E-11	362	419	No hit	No description
PROSITE profile	PS50888	15.485	364	414	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-16	365	431	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.7E-6	367	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-10	370	420	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence Send to blast
MDIGEKDKYE LGKRDEHNNI NYQAPVLSSD WQFGGANLTS AGMSLVPTTN PLAIGSSCAS 60 ASLVDSFGSS LWEHPSNSQN MGFCDFSVQN GANSSNAMEV GKGLPNSLRS SIDRPFDMGW 120 NAASAMLKGG IFLPNTTGIL AQSLSQLPAD SAFIERAARF SSFNGGNFSD MVNPFGVPEP 180 MGLYARGVGL MQGPDDIFAV NGMKSVSVME SQKSKLDATE ATRDAGLRVE NRAKASPLEN 240 ERKSESLMQP NEEAKQGTGG SGNESDEAEI SSRDGGQDEP SALDGTGGEP SAKGLSSKKR 300 KKSIQDAEID RAKGGQTSTK TAKDSPENQQ KQSMMINKTT GKQGSPASHP PKEEYIHVRA 360 RRGQATNSHS LAERVRREKI SERMKFLQDL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF 420 LSMKLATVNP RLDFSIEALL AKDIIQSRAG PSSTLGFSPD LSMGYPPLHP SQPGLVQAPL 480 PVIGNSSDVI HKALSSQLTS MTGGLKEPNQ HSNAWEDELH NVVQMN*

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence Send to blast

MDIGEKDKYE LGKRDEHNNI NYQAPVLSSD WQFGGANLTS AGMSLVPTTN PLAIGSSCAS  60
ASLVDSFGSS LWEHPSNSQN MGFCDFSVQN GANSSNAMEV GKGLPNSLRS SIDRPFDMGW  120
NAASAMLKGG IFLPNTTGIL AQSLSQLPAD SAFIERAARF SSFNGGNFSD MVNPFGVPEP  180
MGLYARGVGL MQGPDDIFAV NGMKSVSVME SQKSKLDATE ATRDAGLRVE NRAKASPLEN  240
ERKSESLMQP NEEAKQGTGG SGNESDEAEI SSRDGGQDEP SALDGTGGEP SAKGLSSKKR  300
KKSIQDAEID RAKGGQTSTK TAKDSPENQQ KQSMMINKTT GKQGSPASHP PKEEYIHVRA  360
RRGQATNSHS LAERVRREKI SERMKFLQDL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF  420
LSMKLATVNP RLDFSIEALL AKDIIQSRAG PSSTLGFSPD LSMGYPPLHP SQPGLVQAPL  480
PVIGNSSDVI HKALSSQLTS MTGGLKEPNQ HSNAWEDELH NVVQMN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	297	301	KKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF146811	1e-102	EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012478823.1	0.0	PREDICTED: transcription factor bHLH49-like isoform X2
Refseq	XP_012478824.1	0.0	PREDICTED: transcription factor bHLH49-like isoform X2
TrEMBL	A0A0D2ND21	0.0	A0A0D2ND21_GOSRA; Uncharacterized protein
STRING	Gorai.005G148300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-128	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G148300.7
Entrez Gene	105794272

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]