PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G146800.1
Common NameB456_005G146800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 202aa    MW: 22331.3 Da    PI: 8.2848
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G146800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP34.17.2e-11143187155
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsef 55 
                         +Cqv+gC++d+ + k+yh+rhkv          +v+g+eqrfCqqCs    +s f
  Gorai.005G146800.1 143 CCQVHGCNKDIRSSKDYHKRHKV----------AVNGIEQRFCQQCSSLIFFSSF 187
                         6********************97..........689***********88776666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.7E-10138181IPR004333Transcription factor, SBP-box
PROSITE profilePS5114112.426141201IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.85E-15142187IPR004333Transcription factor, SBP-box
PfamPF031106.0E-7144187IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDLAVDASGS RKALLGRDIK PFTDSEAVES MEFMDFGFSH MNKKPFYGNT SLGFGAESAK  60
KLVSPTCMFT SSSYYGEEES GSKQSSSLME FNSQGSSLID LKLGRLTDYR DAQHGRHLKE  120
TFVVSSVCSA MTAKKARTTS SPCCQVHGCN KDIRSSKDYH KRHKVAVNGI EQRFCQQCSS  180
LIFFSSFTLF FPSIWSELVI V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478794.11e-131PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
RefseqXP_012478795.11e-131PREDICTED: squamosa promoter-binding-like protein 6 isoform X2
TrEMBLA0A0D2PT951e-147A0A0D2PT95_GOSRA; Uncharacterized protein
STRINGGorai.005G146800.11e-148(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3624722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.12e-15SBP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]