PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G141900.5 | ||||||||
Common Name | B456_005G141900, LOC105794201 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 296aa MW: 32675.7 Da PI: 6.0687 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 27.8 | 5.6e-09 | 1 | 23 | 33 | 55 |
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 ++++++ gLtl+h+kSHLQk+Rl Gorai.005G141900.5 1 MRVIGISGLTLYHLKSHLQKFRL 23 67899*****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-7 | 1 | 25 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 2.3E-23 | 67 | 113 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MRVIGISGLT LYHLKSHLQK FRLGKSQQTE ICLSDNLDDY REIQSGNKDL SSDTSDGTHK 60 LMNESSKIAQ ALQMQMEVQR KLHEQIEVQR HLQLRIEAQG KYLQSVLKKA QETLAGYTSS 120 SVGVELAKAE LSQLVSMVNT GCTSSSLSEL TEIGGSSLKQ MERKPMKGTI CSRESSLTSS 180 ESSGRTEDDE PPKNENICNR KSNTCFEFNF MEIYPEKKGL MSGSSNEVSG KKRSGTNICD 240 GICVDQPVAK RLELPEEETG CGLRKSGLLG SFDLNNQYQN DNESSPKAID LNCKE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX578986 | 3e-55 | JX578986.1 Gossypium hirsutum clone NBRI_GE11130 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012478701.1 | 0.0 | PREDICTED: uncharacterized protein LOC105794201 isoform X1 | ||||
TrEMBL | A0A0D2NCL8 | 0.0 | A0A0D2NCL8_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2RLE3 | 0.0 | A0A0D2RLE3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G141900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.2 | 8e-56 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G141900.5 |
Entrez Gene | 105794201 |
Publications ? help Back to Top | |||
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