PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G141900.4

Common Name

B456_005G141900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 313aa MW: 34694.1 Da PI: 6.3651

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G141900.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	41.7	2.5e-13	11	40	26	55
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPk++++++++ gLtl+h+kSHLQk+Rl Gorai.005G141900.4 11 EATPKNLMRVIGISGLTLYHLKSHLQKFRL 40 7****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.1E-11	10	42	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-7	11	41	IPR006447	Myb domain, plants
Pfam	PF14379	2.5E-23	84	130	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MFLCVYCFRT EATPKNLMRV IGISGLTLYH LKSHLQKFRL GKSQQTEICL SDNLDDYREI 60 QSGNKDLSSD TSDGTHKLMN ESSKIAQALQ MQMEVQRKLH EQIEVQRHLQ LRIEAQGKYL 120 QSVLKKAQET LAGYTSSSVG VELAKAELSQ LVSMVNTGCT SSSLSELTEI GGSSLKQMER 180 KPMKGTICSR ESSLTSSESS GRTEDDEPPK NENICNRKSN TCFEFNFMEI YPEKKGLMSG 240 SSNEVSGKKR SGTNICDGIC VDQPVAKRLE LPEEETGCGL RKSGLLGSFD LNNQYQNDNE 300 SSPKAIDLNC KE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578986	3e-55	JX578986.1 Gossypium hirsutum clone NBRI_GE11130 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012478701.1	0.0	PREDICTED: uncharacterized protein LOC105794201 isoform X1
TrEMBL	A0A0D2SGT3	0.0	A0A0D2SGT3_GOSRA; Uncharacterized protein
STRING	Gorai.005G141900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.2	3e-59	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G141900.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]