PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G141900.2

Common Name

B456_005G141900, LOC105794201

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 365aa MW: 40429.6 Da PI: 6.6192

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G141900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.1	1.5e-31	38	92	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFveav+qLGG++kAtPk++++++++ gLtl+h+kSHLQk+Rl Gorai.005G141900.2 38 KPRLKWTPELHQRFVEAVNQLGGPDKATPKNLMRVIGISGLTLYHLKSHLQKFRL 92 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.847	35	95	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.4E-29	36	94	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.51E-15	37	93	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-22	38	93	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-7	40	90	IPR001005	SANT/Myb domain
Pfam	PF14379	3.2E-23	136	182	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MSFSFLLPSA CLSYTTQNLA LHNMQNQDMN LVLSTDAKPR LKWTPELHQR FVEAVNQLGG 60 PDKATPKNLM RVIGISGLTL YHLKSHLQKF RLGKSQQTEI CLSDNLDDYR EIQSGNKDLS 120 SDTSDGTHKL MNESSKIAQA LQMQMEVQRK LHEQIEVQRH LQLRIEAQGK YLQSVLKKAQ 180 ETLAGYTSSS VGVELAKAEL SQLVSMVNTG CTSSSLSELT EIGGSSLKQM ERKPMKGTIC 240 SRESSLTSSE SSGRTEDDEP PKNENICNRK SNTCFEFNFM EIYPEKKGLM SGSSNEVSGK 300 KRSGTNICDG ICVDQPVAKR LELPEEETGC GLRKSGLLGS FDLNNQYQND NESSPKAIDL 360 NCKE*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MSFSFLLPSA CLSYTTQNLA LHNMQNQDMN LVLSTDAKPR LKWTPELHQR FVEAVNQLGG  60
PDKATPKNLM RVIGISGLTL YHLKSHLQKF RLGKSQQTEI CLSDNLDDYR EIQSGNKDLS  120
SDTSDGTHKL MNESSKIAQA LQMQMEVQRK LHEQIEVQRH LQLRIEAQGK YLQSVLKKAQ  180
ETLAGYTSSS VGVELAKAEL SQLVSMVNTG CTSSSLSELT EIGGSSLKQM ERKPMKGTIC  240
SRESSLTSSE SSGRTEDDEP PKNENICNRK SNTCFEFNFM EIYPEKKGLM SGSSNEVSGK  300
KRSGTNICDG ICVDQPVAKR LELPEEETGC GLRKSGLLGS FDLNNQYQND NESSPKAIDL  360
NCKE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-20	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-20	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-20	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-20	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-20	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-20	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-20	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-20	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-20	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578986	4e-55	JX578986.1 Gossypium hirsutum clone NBRI_GE11130 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012478701.1	0.0	PREDICTED: uncharacterized protein LOC105794201 isoform X1
Swissprot	F4I274	1e-80	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A0D2NCL8	0.0	A0A0D2NCL8_GOSRA; Uncharacterized protein
STRING	Gorai.005G141900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.2	1e-82	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G141900.2
Entrez Gene	105794201

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]