PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G141900.1 | ||||||||
Common Name | B456_005G141900, LOC105794201 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 365aa MW: 40429.6 Da PI: 6.6192 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.1 | 1.5e-31 | 38 | 92 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFveav+qLGG++kAtPk++++++++ gLtl+h+kSHLQk+Rl Gorai.005G141900.1 38 KPRLKWTPELHQRFVEAVNQLGGPDKATPKNLMRVIGISGLTLYHLKSHLQKFRL 92 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.847 | 35 | 95 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-29 | 36 | 94 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.51E-15 | 37 | 93 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-22 | 38 | 93 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-7 | 40 | 90 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.2E-23 | 136 | 182 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MSFSFLLPSA CLSYTTQNLA LHNMQNQDMN LVLSTDAKPR LKWTPELHQR FVEAVNQLGG 60 PDKATPKNLM RVIGISGLTL YHLKSHLQKF RLGKSQQTEI CLSDNLDDYR EIQSGNKDLS 120 SDTSDGTHKL MNESSKIAQA LQMQMEVQRK LHEQIEVQRH LQLRIEAQGK YLQSVLKKAQ 180 ETLAGYTSSS VGVELAKAEL SQLVSMVNTG CTSSSLSELT EIGGSSLKQM ERKPMKGTIC 240 SRESSLTSSE SSGRTEDDEP PKNENICNRK SNTCFEFNFM EIYPEKKGLM SGSSNEVSGK 300 KRSGTNICDG ICVDQPVAKR LELPEEETGC GLRKSGLLGS FDLNNQYQND NESSPKAIDL 360 NCKE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-20 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-20 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-20 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-20 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-20 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-20 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-20 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-20 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-20 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-20 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-20 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-20 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX578986 | 4e-55 | JX578986.1 Gossypium hirsutum clone NBRI_GE11130 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012478701.1 | 0.0 | PREDICTED: uncharacterized protein LOC105794201 isoform X1 | ||||
Swissprot | F4I274 | 1e-80 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A0D2NCL8 | 0.0 | A0A0D2NCL8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G141900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3878 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.2 | 1e-82 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G141900.1 |
Entrez Gene | 105794201 |
Publications ? help Back to Top | |||
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