PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G139600.4 | ||||||||
Common Name | B456_005G139600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 215aa MW: 24749.3 Da PI: 8.2218 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.8 | 3.9e-18 | 80 | 133 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Gorai.005G139600.4 80 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 133 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132.2 | 2e-42 | 79 | 169 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+y+a+k++n++L++++++L++e+ Gorai.005G139600.4 79 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAIKADNDALQTQNQKLHAEV 169 69**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.41E-20 | 70 | 137 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.329 | 75 | 135 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-17 | 78 | 139 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.90E-16 | 80 | 136 | No hit | No description |
Pfam | PF00046 | 1.7E-15 | 80 | 133 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-19 | 82 | 142 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.1E-6 | 106 | 115 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 110 | 133 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.1E-6 | 115 | 131 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.7E-15 | 135 | 173 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSCNGMAFFP ANFMLQSPHE EDHQPSTSIN QMLPSCPPQD FHGVASFLGK RSMSFSGIDV 60 CEEANGEDDL SDDGSQAGEK KRRLNMEQVK TLEKNFELGN KLEPERKMQL ARALGLQPRQ 120 IAIWFQNRRA RWKTKQLEKD YDLLKRQYEA IKADNDALQT QNQKLHAEVI ILTKYTYVFI 180 HLSVFIFSLS CRPCFMLRNA LKFLFHQTSI QLNN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 135 | RRARWKTKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012478668.1 | 1e-124 | PREDICTED: homeobox-leucine zipper protein ATHB-13 | ||||
Refseq | XP_012478669.1 | 1e-124 | PREDICTED: homeobox-leucine zipper protein ATHB-13 | ||||
Swissprot | Q8LC03 | 6e-83 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A0D2PSW8 | 1e-160 | A0A0D2PSW8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G139600.1 | 1e-123 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 2e-85 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G139600.4 |
Publications ? help Back to Top | |||
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