PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G138100.1
Common NameB456_005G138100, LOC105794154
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 347aa    MW: 38372.6 Da    PI: 9.687
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G138100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.63.6e-1458106155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+ykGV   + +grW A+I++      ++r++lg+f  ++eAaka++ a+++++g
  Gorai.005G138100.1  58 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDIAAQRFRG 106
                         89****9888.8*********3.....5**********99*************98 PP
2B3103.98.7e-33189290197
                         EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         f+k+ tpsdv+k++rlv+pk++ae++     gg + +++ l led +g++W++k++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ 
  Gorai.005G138100.1 189 FEKAVTPSDVGKLNRLVIPKQHAEKYfplqsGGASSKGVLLNLEDVTGKVWRFKYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRST 279
                         89*****************************888899***************************************************886 PP

                         SSEE..EEEEE CS
                  B3  87 rsefelvvkvf 97 
                           e++l++++ 
  Gorai.005G138100.1 280 GAEKKLYIHWK 290
                         67777888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.91E-2558116No hitNo description
SuperFamilySSF541713.66E-1758115IPR016177DNA-binding domain
PfamPF008475.2E-958106IPR001471AP2/ERF domain
SMARTSM003807.6E-3059120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-2059115IPR001471AP2/ERF domain
PROSITE profilePS5103219.90259114IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.1E-41183292IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-32188292IPR015300DNA-binding pseudobarrel domain
CDDcd100173.85E-29188288No hitNo description
PROSITE profilePS5086314.833189291IPR003340B3 DNA binding domain
PfamPF023623.8E-30189291IPR003340B3 DNA binding domain
SMARTSM010192.2E-27189293IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDGGCIAIDE STTSDSMSIS ISSLLPPVTK YPDSLCRVGS GTSVIVESKA ESKKLPSSKY  60
KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAAKAYDIA AQRFRGPDAV TNFKHLQETE  120
EDGIEMAFLN THSKAEIVDM LRKHTYNDEL EQSRTRRCYG FDGNGKRVVG NEAVFGSFGA  180
EVKARDQLFE KAVTPSDVGK LNRLVIPKQH AEKYFPLQSG GASSKGVLLN LEDVTGKVWR  240
FKYSYWNSSQ SYVLTKGWSR FVKEKNLKAG DIVSFQRSTG AEKKLYIHWK AKSGVENPVG  300
LRLFGVKIFG GAATGNLGCN NGKRTREIEL LALECSKKQR AIINAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5718629611121DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.37660.0seedling
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487456250.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in all tissues examined: Roots, rosette leaves, cauline leaves, inflorescence stems, flowers and siliques. Highest expression in roots and rosette leaves. Very low expression in flowers. {ECO:0000269|PubMed:9862967}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Function -- GeneRIF ? help Back to Top
  1. Expressions of the stress-related genes were altered in the GhRAV1 transgenic Arabidopsis plants under high salinity and drought stresses.
    [PMID: 25710493]
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6188490.0JQ618849.1 UNVERIFIED: Gossypium hirsutum RAV1-like mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478634.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-140RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A0D2RL590.0A0A0D2RL59_GOSRA; Uncharacterized protein
STRINGGorai.005G138100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-139related to ABI3/VP1 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  3. Li XJ, et al.
    Overexpression of cotton RAV1 gene in Arabidopsis confers transgenic plants high salinity and drought sensitivity.
    PLoS ONE, 2015. 10(2): p. e0118056
    [PMID:25710493]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  6. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]