PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G133400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Nin-like | ||||||||
Protein Properties | Length: 188aa MW: 20937.4 Da PI: 6.9302 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 37.9 | 3.5e-12 | 50 | 73 | 26 | 49 |
RWP-RK 26 gvclTvLKriCRqyGIkRWPhRki 49 gvc++vLK+iCR++G++RWPh k+ Gorai.005G133400.1 50 GVCTSVLKKICRENGLDRWPHSKL 73 8********************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02042 | 6.9E-10 | 50 | 74 | IPR003035 | RWP-RK domain |
Pfam | PF08590 | 8.0E-7 | 91 | 134 | IPR013899 | Domain of unknown function DUF1771 |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MLLHPDSVPH LLRMLAVIAI LIFNHGLGIP PNSLPSFPFS ALILSDISQG VCTSVLKKIC 60 RENGLDRWPH SKLDAGLAAA ILMQNLNRIS MAATAYSKGE LEYAAYLFDQ EKIQTKLARE 120 ANERASQNIF KARNSVWYGA SFLLQVTYLF DKMEECLGIV LLEALQNGTA VLDLKKLENL 180 FYYIFDT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012459805.1 | 1e-56 | PREDICTED: uncharacterized protein LOC105780177 isoform X1 | ||||
Refseq | XP_012459806.1 | 1e-56 | PREDICTED: uncharacterized protein LOC105780177 isoform X1 | ||||
TrEMBL | A0A2P5SRL1 | 2e-87 | A0A2P5SRL1_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.005G133400.1 | 1e-136 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM36243 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G133400.1 |