PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G129300.3
Common NameB456_005G129300, LOC105794043
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 305aa    MW: 34136.6 Da    PI: 5.6805
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G129300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.32.2e-12200225126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         y   +C+++ +tG+C yGd+CkF+H+
  Gorai.005G129300.3 200 YQPDICKDYKETGYCGYGDSCKFMHD 225
                         67789********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.7E-9198230IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7199226IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878199227IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10200225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-12200230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.9E-9270303IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.42E-9277303No hitNo description
CDDcd001621.18E-5278304No hitNo description
PROSITE patternPS005180293302IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MADSSELQDP GKELRQSETE PQQSEQVCNF FRKPTKGKNI RKRTINEDED EDSRNGTSLL  60
HNQKKASKPD NKLYFSTGSS KSATATESST ESHKLVLQFE SSKEIQVQND SGATAILETE  120
TEFTKDARAI REKVLKRAEE ALKGKSTSSG GEKLYTGMHG YVDHKAGFRR EQTVASEKAG  180
GSHGPLRASA HIRVSARFDY QPDICKDYKE TGYCGYGDSC KFMHDRGDYK SGWQLEKEWE  240
EAEKARKRNL ALGEGDDDDE AGVVQSDDDD DDTLPFACFI CRQPFVDPVV TKCKHYFCEH  300
CALK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M5e-542530412288RING finger protein 113A
5z58_M5e-542530412288RING finger protein 113A
6ff4_t5e-542530412288RING finger protein 113A
6ff7_t5e-542530412288RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5276341e-91HQ527634.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GMUBB simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478479.10.0PREDICTED: zinc finger CCCH domain-containing protein 1 isoform X2
SwissprotQ8GX841e-151C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A0D2PS820.0A0A0D2PS82_GOSRA; Uncharacterized protein
STRINGGorai.005G129300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-131C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]