PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G126000.2

Common Name

B456_005G126000, LOC105793992

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 994aa MW: 109107 Da PI: 5.4854

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G126000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.7e-29	601	652	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Gorai.005G126000.2 601 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 652 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.665	584	672	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-26	604	652	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.58E-22	887	978	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.7E-24	890	972	No hit	No description
SMART	SM00666	7.2E-23	893	975	IPR000270	PB1 domain
PROSITE profile	PS51745	23.4	893	975	IPR000270	PB1 domain
CDD	cd06407	1.43E-31	894	974	No hit	No description
Pfam	PF00564	2.9E-17	894	974	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 994 aa Download sequence Send to blast
MKKMELPFSS KEKGHGYWVP PRAQMEGGEQ FDGTAQNLVS EDPFSFSELM NFDSYAGWCN 60 SPAAIDQTFA SFGLSSYPPL PYTSFDTLHI TGPSSGAFAE AGDALSGMDS SYNFADRMVY 120 QQTDAHFGNS LDSADGELGG RQNNGGTRQS NSLVLANSLV SRSIKRSLDE RMLRALSLFK 180 ESSGGGILAQ VWVPIKHGDQ YMLTTSNQPY LLDQMLSGYR EVSRTYAFPA ELKRGSFPGL 240 PGRVFISRVP EWTSNVIHYS KVEYLRFAHA INHKVRGSIA LPIFEPSEMS CCAVLELVTM 300 KEKHNFDSEI ENVSVALQAV NLRTTAPPRL FPQCLSRNQR AALGEIADVL RAVCHAHRLP 360 LALTWIPCNY TEEAEDETTK LRVREGDTGH DGKCVLCIED TACYVNDKGM QDFVHACIEH 420 YLEEGQGIAG KALQSNHPFF SADVKTYDIN DYPLVHHARK FNLNAAVAIR LRSTDTGDDD 480 YILEFFLPVT MKGSSEQQLL LNNLSGTMQR ICRSLRTVSD VEISGEGSNV EFQSGTVPNF 540 PLTSMSRSSE TVLSADSERN SHDRVPLNAS NATSDGKEKD GPPEQAMTRL RRHVEKKRNT 600 AEKNVSLSVL QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLRKIQ 660 TVLDSVQGVE GGLKFDPATG AFVAAGNVIQ EADTQKTLVF SNRNLPTRVP NPVDQEKSSA 720 PLASCPDGEN SVVKLEEDEC SVGGNNRDAI RSVLIQSTLD SKSVGPDSRS FQAASFGTAT 780 WTCPENATTD SYVEGGQRWG FNNGNLKVED SDCHFVSGSS SSLAAAAAAD EIDTRMEDDD 840 GIVEHNHQPI SSSMTDSLNG SGSMLHRSSS SSQSFEDAED TKPKTISVDS SSKITVKATY 900 KDDTVRFKFK PSAGCFHLYE EVAKRFKIQI GTFQLKYLDD EEEWVLLVSD SDLLECLEIL 960 EYIGSRSLKF QVRDIPCTMG SSGSSNCFLT GGS*

Sequence ? help Back to Top

Protein Sequence Length: 994 aa Download sequence Send to blast

MKKMELPFSS KEKGHGYWVP PRAQMEGGEQ FDGTAQNLVS EDPFSFSELM NFDSYAGWCN  60
SPAAIDQTFA SFGLSSYPPL PYTSFDTLHI TGPSSGAFAE AGDALSGMDS SYNFADRMVY  120
QQTDAHFGNS LDSADGELGG RQNNGGTRQS NSLVLANSLV SRSIKRSLDE RMLRALSLFK  180
ESSGGGILAQ VWVPIKHGDQ YMLTTSNQPY LLDQMLSGYR EVSRTYAFPA ELKRGSFPGL  240
PGRVFISRVP EWTSNVIHYS KVEYLRFAHA INHKVRGSIA LPIFEPSEMS CCAVLELVTM  300
KEKHNFDSEI ENVSVALQAV NLRTTAPPRL FPQCLSRNQR AALGEIADVL RAVCHAHRLP  360
LALTWIPCNY TEEAEDETTK LRVREGDTGH DGKCVLCIED TACYVNDKGM QDFVHACIEH  420
YLEEGQGIAG KALQSNHPFF SADVKTYDIN DYPLVHHARK FNLNAAVAIR LRSTDTGDDD  480
YILEFFLPVT MKGSSEQQLL LNNLSGTMQR ICRSLRTVSD VEISGEGSNV EFQSGTVPNF  540
PLTSMSRSSE TVLSADSERN SHDRVPLNAS NATSDGKEKD GPPEQAMTRL RRHVEKKRNT  600
AEKNVSLSVL QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLRKIQ  660
TVLDSVQGVE GGLKFDPATG AFVAAGNVIQ EADTQKTLVF SNRNLPTRVP NPVDQEKSSA  720
PLASCPDGEN SVVKLEEDEC SVGGNNRDAI RSVLIQSTLD SKSVGPDSRS FQAASFGTAT  780
WTCPENATTD SYVEGGQRWG FNNGNLKVED SDCHFVSGSS SSLAAAAAAD EIDTRMEDDD  840
GIVEHNHQPI SSSMTDSLNG SGSMLHRSSS SSQSFEDAED TKPKTISVDS SSKITVKATY  900
KDDTVRFKFK PSAGCFHLYE EVAKRFKIQI GTFQLKYLDD EEEWVLLVSD SDLLECLEIL  960
EYIGSRSLKF QVRDIPCTMG SSGSSNCFLT GGS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.192	0.0	flower\|seedling\| flowering

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	48792081	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012478385.1	0.0	PREDICTED: protein NLP8
Refseq	XP_012478387.1	0.0	PREDICTED: protein NLP8
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A0D2RK53	0.0	A0A0D2RK53_GOSRA; Uncharacterized protein
STRING	Gorai.005G126000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G126000.2
Entrez Gene	105793992

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]