PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G122500.3 | ||||||||
Common Name | B456_005G122500, LOC105793950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 858aa MW: 95521.3 Da PI: 7.8445 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.9 | 1.5e-07 | 169 | 190 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t +C+ f++ G C++G+ C+F H Gorai.005G122500.3 169 TQICKKFMA-GRCRRGSLCHFLH 190 789******.************* PP | |||||||
2 | zf-CCCH | 20.1 | 1.1e-06 | 295 | 315 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f+ G C+ G+ C+F+H+ Gorai.005G122500.3 295 PCKYFST-GNCHNGNYCRFSHP 315 7******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.779 | 166 | 193 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-4 | 166 | 192 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.3E-7 | 169 | 191 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-5 | 169 | 190 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.746 | 226 | 253 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.023 | 226 | 252 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.727 | 290 | 317 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0019 | 290 | 316 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 295 | 320 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 858 aa Download sequence Send to blast |
MLRTIVEMSK SRKRSSKWDL KEEHQYSLEN VQDSAWFANA CDRESEHGSF SPEFGRNGNK 60 WSAIKSKHGL PSKEYLHGSK CGENNSDCAT NWKTTTPCDG DETYSMKKSP TLNDRRQQNC 120 HHSLKSDWSR SQRSRSRSRS RSRSRSPIDG IGRQPGFLEM TRNGSGVSTQ ICKKFMAGRC 180 RRGSLCHFLH QDIQSHEDGS DNRQKRASVS KYITCNEDKY YLIESGRSTD CCTDYRKGNC 240 RRGASCRSAH DGVSDGFSKG SINEISRERE NNKRNKLTSP EQDVEREARK SSSIPCKYFS 300 TGNCHNGNYC RFSHPASTEC DRGQWGRSSV SSDMLLDGAE LTDIDASFNV DKYGNASNGS 360 DADVSNESEI PWTGPKWSAA DASIDLHNSR ASSKQSDISV YLGASKLNKD TNEFSSCNID 420 ERWQHGYDAC GKNSESNVHC KRIDIDKEDL KKIENVGVNT GVSEPKGAEE SIVAMEMSPM 480 WNCRLHSSVD KEKSHSSEPT PVGTSLRAHG KNIIEKASGH AHDEHAASQL MSIEESNFHL 540 DHMTRGSSCA VLRSFDHPGP SSSSLPYSNL NTVRQSELSF PSNEVNVKVP QNNLLLQEEK 600 PSNKLNIGDT NILHGNYGFP STQNMVTFAN SRGPVESGQE IIFPEQYNPR SDSIDPAKKQ 660 DTNTEPLGFS VHPVSQESTA DGKLELSAKN FLPSSLVGGR NGSDYHNDHS SKRDSDFDSH 720 KPNQLEPIAS FELTKENGGI VQTKKAEAEN KNGLSENTDA DDRTEEGKKS KDVKGVRAFK 780 FALVEFVKDL LKPTWKEGQI GKEAYKSIVR KVVDKVTATM QGTNIPRTPE KIDQYLSFSK 840 PKLSKLVHAY VEKFQKS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 144 | RSRSRSRSRSR |
2 | 136 | 144 | RSRSRSRSR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012478323.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 38-like | ||||
TrEMBL | A0A0D2RJW6 | 0.0 | A0A0D2RJW6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G122500.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 9e-17 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G122500.3 |
Entrez Gene | 105793950 |
Publications ? help Back to Top | |||
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