PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G111000.3 | ||||||||
Common Name | B456_005G111000, LOC105793819 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 570aa MW: 62572.1 Da PI: 6.9348 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 40.3 | 6.7e-13 | 406 | 464 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr +r NR +A rs qRK ++i+eLe+kv++L++e ++L +l +l+ +a+l+s++ Gorai.005G111000.3 406 KRVKRILANRQSAARSKQRKMQYIAELEQKVQTLQTEATTLSAQLTMLQRDSAELTSQN 464 8999****************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.6E-19 | 402 | 466 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.323 | 404 | 467 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.6E-11 | 406 | 464 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.1E-12 | 406 | 463 | No hit | No description |
SuperFamily | SSF57959 | 8.75E-12 | 406 | 462 | No hit | No description |
CDD | cd14703 | 4.22E-24 | 407 | 458 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MKMEGSNSIP KPQSNLDIPF SNASQMASPS PSSSPSPSPS YMRLSPENNN SKRPGIPPSH 60 PNNPTASLPY SQQIIGSRPN AQHGAPSHSR SLSQPTFFSL DRLPPWCPPP YRDPPVSSAS 120 DPASNDVSME ERFANSNVRF SLPSPVAGGC NEFRIGESSS LPPRKGHRRS SSDVPLGFST 180 MIQSLPQSIP IGNPGVLDRS VSGRETSFGV GKPIQLVKRE SEWRKDSGSN LEVTGERKSE 240 VDVADDLFNA YMNLENLETL NSSGTEDRDM DSKASGTKTY GGESSDNEVD SRVHKHPISI 300 QGMSSGVSNE KREGVKRRAA GDIAPTVRHY RSVSMDSYMG SLQFDEDTPK IPPSGNHGNH 360 HSPGSPGDAN SSKFNFELGS SEFNESELKK IMENEKLAEM ASVDPKRVKR ILANRQSAAR 420 SKQRKMQYIA ELEQKVQTLQ TEATTLSAQL TMLQRDSAEL TSQNNELKFR LQAMEQQAQL 480 KDALNEALAA EVQRLKLTAA EFSGEVHLSN CMAQQLSIDH QMLQLQPQQQ QQRNIYQMQQ 540 QHQQPQQGHH NQSQTQQQNG DASAANESK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 418 | 426 | ARSKQRKMQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012478118.1 | 0.0 | PREDICTED: uncharacterized protein LOC105793819 | ||||
Refseq | XP_012478119.1 | 0.0 | PREDICTED: uncharacterized protein LOC105793819 | ||||
Refseq | XP_012478120.1 | 0.0 | PREDICTED: uncharacterized protein LOC105793819 | ||||
Refseq | XP_012478121.1 | 0.0 | PREDICTED: uncharacterized protein LOC105793819 | ||||
Refseq | XP_012478123.1 | 0.0 | PREDICTED: uncharacterized protein LOC105793819 | ||||
Refseq | XP_012478124.1 | 0.0 | PREDICTED: uncharacterized protein LOC105793819 | ||||
TrEMBL | A0A0D2SEH9 | 0.0 | A0A0D2SEH9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G111000.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38900.3 | 1e-117 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G111000.3 |
Entrez Gene | 105793819 |
Publications ? help Back to Top | |||
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