PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G109600.1 | ||||||||
Common Name | B456_005G109600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 174aa MW: 20155.8 Da PI: 9.9186 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36 | 1.5e-11 | 55 | 101 | 5 | 51 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 ++ +r+++NRe+ArrsR RK++ ++ L + eL++ N + ++ Gorai.005G109600.1 55 RKRKRMESNRESARRSRMRKQKHLDDLVGQITELKKDNNQILTSINF 101 6789**********************************988777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 8.3E-11 | 46 | 135 | No hit | No description |
SMART | SM00338 | 8.2E-17 | 51 | 115 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.059 | 53 | 116 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.05E-12 | 55 | 107 | No hit | No description |
Pfam | PF00170 | 4.4E-9 | 55 | 99 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 5.20E-18 | 56 | 106 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 58 | 73 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MSPVVSEILR SGFIINSSLR RRTHLVQSFS VVFLYCGNSN SNSSGSTQHQ LMDQRKRKRM 60 ESNRESARRS RMRKQKHLDD LVGQITELKK DNNQILTSIN FTTHRYLNIE AENSVLRAQM 120 TELSQRLDSL NDILQYLNRE GIEYTPDCFT NPFNVPYLNQ QPPIMASAHI FQY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 75 | RKRKRMESNRESARRSRMRKQK |
2 | 67 | 74 | RRSRMRKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in stems and flowers (PubMed:9620274). Expressed in root tips, cotyledons, leaf vasculature, embryos, apical parts of siliques and funiculi (PubMed:9721683). {ECO:0000269|PubMed:9620274, ECO:0000269|PubMed:9721683}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the DNA sequence 5'-ACTCAT-3' in target gene promoters. Promotes POX1/PRODH1 expression in response to hypoosmolarity stress (PubMed:15047879). Positively regulates the expression of ASN1 and POX2/PRODH2 genes, which are involved in amino acid metabolism (PubMed:18088315). Regulates several metabolic pathways such as myo-inositol, raffinose and trehalose. Regulates several trehalose metabolism genes, including TRE1, TPP5 and TPP6 (PubMed:21534971). Mediates recruitment of the histone acetylation machinery to activate auxin-induced transcription. Interacts with ADA2B adapter protein to promote ADA2B-mediated recruitment of SAGA-like histone acetyltransferase complexes to specific auxin-responsive genes (PubMed:24861440). {ECO:0000269|PubMed:15047879, ECO:0000269|PubMed:18088315, ECO:0000269|PubMed:21534971, ECO:0000269|PubMed:24861440}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light (PubMed:9620274). Induced by hypoosmolarity (PubMed:15047879). Repressed by sucrose (at protein level) (PubMed:9721683, PubMed:15208401). {ECO:0000269|PubMed:15047879, ECO:0000269|PubMed:15208401, ECO:0000269|PubMed:9620274, ECO:0000269|PubMed:9721683}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017634928.1 | 1e-108 | PREDICTED: bZIP transcription factor 11-like | ||||
Swissprot | O65683 | 1e-38 | BZP11_ARATH; bZIP transcription factor 11 | ||||
TrEMBL | A0A0D2NAP5 | 1e-125 | A0A0D2NAP5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G109600.1 | 1e-126 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM501 | 28 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34590.1 | 6e-41 | G-box binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G109600.1 |