PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G105400.5
Common NameB456_005G105400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 331aa    MW: 37653.8 Da    PI: 10.3045
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G105400.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.64e-1721115198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         f+ ++++ +v+ s  l +p +fa eh   ++++++l+l++++g  W+v+    ++   +++l +GW +Fv++n++k+gD+++F+l++  +f
  Gorai.005G105400.5  21 FVRIMKRFNVSGSYTLNIPYQFAMEHL--PNCKTELVLQNLKGACWTVNSVPtTRVHTSHTLCGGWLSFVRSNEIKAGDICIFELVH--KF 107
                         556677778888899********9996..45899***************954566666799***********************987..78 PP

                         ..EEEEE- CS
                  B3  91 elvvkvfr 98 
                         e++v+++r
  Gorai.005G105400.5 108 EFRVHILR 115
                         88999987 PP

2B350.92.7e-162353151396
                         TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                  B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                         s  l +p kf +eh   + ++++++l++++g+ W+v+   + k+++ +++ +GW  Fv++n++k gD+++F+l+++   e++v++
  Gorai.005G105400.5 235 SYTLKIPYKFSKEHL--PYCKTQVVLRNLQGKCWTVNSLPDSKGRAvHTFCGGWMAFVRDNEIKIGDICIFELVNN--YEMRVHI 315
                         55699*********4..346778***************6655555579999*********************9875..3345555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2312115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-2514116IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-1919115No hitNo description
SMARTSM010196.8E-1521117IPR003340B3 DNA binding domain
PROSITE profilePS5086313.46521117IPR003340B3 DNA binding domain
PfamPF023621.3E-1421115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-23215317IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-25217318IPR015300DNA-binding pseudobarrel domain
CDDcd100175.38E-20221315No hitNo description
SMARTSM010196.0E-12223319IPR003340B3 DNA binding domain
PROSITE profilePS5086313.521223319IPR003340B3 DNA binding domain
PfamPF023622.2E-13232314IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MIGEFEEKKV AQSFNSCFPF FVRIMKRFNV SGSYTLNIPY QFAMEHLPNC KTELVLQNLK  60
GACWTVNSVP TTRVHTSHTL CGGWLSFVRS NEIKAGDICI FELVHKFEFR VHILRVGQED  120
LDRQSRKAVL DRSDSTLLKK LVKNTSKVHS KLKKVQICDN KGSKVLDKWK YGNAAKKSAS  180
FVLCSLSRSG TEKQEAAISG LRMMMTVDEE KAARSFASRF PSFVRIMRKF NISGSYTLKI  240
PYKFSKEHLP YCKTQVVLRN LQGKCWTVNS LPDSKGRAVH TFCGGWMAFV RDNEIKIGDI  300
CIFELVNNYE MRVHISGPGR KGLDRQHTSL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478061.10.0PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X1
RefseqXP_012478062.10.0PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X1
RefseqXP_012478063.10.0PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X1
TrEMBLA0A0D2SEA90.0A0A0D2SEA9_GOSRA; Uncharacterized protein
STRINGGorai.005G105400.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-13B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]