PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G105400.5 | ||||||||
Common Name | B456_005G105400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 331aa MW: 37653.8 Da PI: 10.3045 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.6 | 4e-17 | 21 | 115 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+ ++++ +v+ s l +p +fa eh ++++++l+l++++g W+v+ ++ +++l +GW +Fv++n++k+gD+++F+l++ +f Gorai.005G105400.5 21 FVRIMKRFNVSGSYTLNIPYQFAMEHL--PNCKTELVLQNLKGACWTVNSVPtTRVHTSHTLCGGWLSFVRSNEIKAGDICIFELVH--KF 107 556677778888899********9996..45899***************954566666799***********************987..78 PP ..EEEEE- CS B3 91 elvvkvfr 98 e++v+++r Gorai.005G105400.5 108 EFRVHILR 115 88999987 PP | |||||||
2 | B3 | 50.9 | 2.7e-16 | 235 | 315 | 13 | 96 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 s l +p kf +eh + ++++++l++++g+ W+v+ + k+++ +++ +GW Fv++n++k gD+++F+l+++ e++v++ Gorai.005G105400.5 235 SYTLKIPYKFSKEHL--PYCKTQVVLRNLQGKCWTVNSLPDSKGRAvHTFCGGWMAFVRDNEIKIGDICIFELVNN--YEMRVHI 315 55699*********4..346778***************6655555579999*********************9875..3345555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-23 | 12 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.65E-25 | 14 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.63E-19 | 19 | 115 | No hit | No description |
SMART | SM01019 | 6.8E-15 | 21 | 117 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.465 | 21 | 117 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-14 | 21 | 115 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-23 | 215 | 317 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-25 | 217 | 318 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.38E-20 | 221 | 315 | No hit | No description |
SMART | SM01019 | 6.0E-12 | 223 | 319 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.521 | 223 | 319 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-13 | 232 | 314 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MIGEFEEKKV AQSFNSCFPF FVRIMKRFNV SGSYTLNIPY QFAMEHLPNC KTELVLQNLK 60 GACWTVNSVP TTRVHTSHTL CGGWLSFVRS NEIKAGDICI FELVHKFEFR VHILRVGQED 120 LDRQSRKAVL DRSDSTLLKK LVKNTSKVHS KLKKVQICDN KGSKVLDKWK YGNAAKKSAS 180 FVLCSLSRSG TEKQEAAISG LRMMMTVDEE KAARSFASRF PSFVRIMRKF NISGSYTLKI 240 PYKFSKEHLP YCKTQVVLRN LQGKCWTVNS LPDSKGRAVH TFCGGWMAFV RDNEIKIGDI 300 CIFELVNNYE MRVHISGPGR KGLDRQHTSL * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012478061.1 | 0.0 | PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X1 | ||||
Refseq | XP_012478062.1 | 0.0 | PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X1 | ||||
Refseq | XP_012478063.1 | 0.0 | PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X1 | ||||
TrEMBL | A0A0D2SEA9 | 0.0 | A0A0D2SEA9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G105400.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 3e-13 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G105400.5 |
Publications ? help Back to Top | |||
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