PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G105400.4
Common NameB456_005G105400, LOC105793765
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 534aa    MW: 60396.1 Da    PI: 8.7424
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G105400.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3573.5e-181299499
                        E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                  B3  4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                        v+  s++++ + l++p  f ++ +g    s  + l+ +sg sW+vkl   ++ +  ++ +GW +Fv ++ L+ gDf+vF++dg+  f   vkv
  Gorai.005G105400.4 12 VF--SSTSSANSLRIPVGFNRNLEGR--VSASVLLKGPSGYSWNVKL--VQRNDDLLFDEGWADFVADHSLECGDFLVFRYDGDLVF--EVKV 96
                        44..77788888*******9888766..4557***************..777778**************************998777..9999 PP

                        E-S CS
                  B3 97 frk 99
                        f++
  Gorai.005G105400.4 97 FDQ 99
                        987 PP

2B352.59e-17227320298
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         + ++++ +v+ s  l +p +fa eh   ++++++l+l++++g  W+v+    ++   +++l +GW +Fv++n++k+gD+++F+l++  +fe
  Gorai.005G105400.4 227 VRIMKRFNVSGSYTLNIPYQFAMEHL--PNCKTELVLQNLKGACWTVNSVPtTRVHTSHTLCGGWLSFVRSNEIKAGDICIFELVH--KFE 313
                         56667778888899********9996..45899***************954566666799***********************987..788 PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                         ++v+++r
  Gorai.005G105400.4 314 FRVHILR 320
                         8999987 PP

3B349.86.1e-164385181396
                         TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                  B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                         s  l +p kf +eh   + ++++++l++++g+ W+v+   + k+++ +++ +GW  Fv++n++k gD+++F+l+++   e++v++
  Gorai.005G105400.4 438 SYTLKIPYKFSKEHL--PYCKTQVVLRNLQGKCWTVNSLPDSKGRAvHTFCGGWMAFVRDNEIKIGDICIFELVNN--YEMRVHI 518
                         45699*********4..346778***************6655555579999*********************9875..3345555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-232102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-232102IPR015300DNA-binding pseudobarrel domain
CDDcd100171.63E-16798No hitNo description
PROSITE profilePS5086315.3687100IPR003340B3 DNA binding domain
SMARTSM010192.7E-149100IPR003340B3 DNA binding domain
PfamPF023623.0E-151199IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-23217320IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-24219321IPR015300DNA-binding pseudobarrel domain
CDDcd100176.02E-19224320No hitNo description
PROSITE profilePS5086313.465226322IPR003340B3 DNA binding domain
SMARTSM010196.8E-15226322IPR003340B3 DNA binding domain
PfamPF023623.1E-14226320IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-23418520IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.75E-24420521IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-19424518No hitNo description
PROSITE profilePS5086313.521426522IPR003340B3 DNA binding domain
SMARTSM010196.0E-12426522IPR003340B3 DNA binding domain
PfamPF023624.9E-13435517IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MSKPRRPHFL NVFSSTSSAN SLRIPVGFNR NLEGRVSASV LLKGPSGYSW NVKLVQRNDD  60
LLFDEGWADF VADHSLECGD FLVFRYDGDL VFEVKVFDQS SCEKEVAFHC KCSQAGSVFN  120
GILGQKRYRE EEDVSLDQDC EELLKRIRQS SSESVRDEEH CGRELILATT SCQGLTSCDE  180
NHDGTILKIT GKEDDLNLHG SGCIQMIGEF EEKKVAQSFN SCFPFFVRIM KRFNVSGSYT  240
LNIPYQFAME HLPNCKTELV LQNLKGACWT VNSVPTTRVH TSHTLCGGWL SFVRSNEIKA  300
GDICIFELVH KFEFRVHILR VGQEDLDRQS RKAVLDRSDS TLLKKLVKNT SKVHSKLKKV  360
QICDNKGSKV LDKWKYGNAA KKSASFVLCS LSRSGTEKQA ISGLRMMMTV DEEKAARSFA  420
SRFPSFVRIM RKFNISGSYT LKIPYKFSKE HLPYCKTQVV LRNLQGKCWT VNSLPDSKGR  480
AVHTFCGGWM AFVRDNEIKI GDICIFELVN NYEMRVHISG PGRKGLDRQH TSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A8e-14810210104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478064.10.0PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X2
TrEMBLA0A0D2PR200.0A0A0D2PR20_GOSRA; Uncharacterized protein
STRINGGorai.005G105400.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-21B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]