PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G105400.4 | ||||||||
Common Name | B456_005G105400, LOC105793765 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 534aa MW: 60396.1 Da PI: 8.7424 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57 | 3.5e-18 | 12 | 99 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 v+ s++++ + l++p f ++ +g s + l+ +sg sW+vkl ++ + ++ +GW +Fv ++ L+ gDf+vF++dg+ f vkv Gorai.005G105400.4 12 VF--SSTSSANSLRIPVGFNRNLEGR--VSASVLLKGPSGYSWNVKL--VQRNDDLLFDEGWADFVADHSLECGDFLVFRYDGDLVF--EVKV 96 44..77788888*******9888766..4557***************..777778**************************998777..9999 PP E-S CS B3 97 frk 99 f++ Gorai.005G105400.4 97 FDQ 99 987 PP | |||||||
2 | B3 | 52.5 | 9e-17 | 227 | 320 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 + ++++ +v+ s l +p +fa eh ++++++l+l++++g W+v+ ++ +++l +GW +Fv++n++k+gD+++F+l++ +fe Gorai.005G105400.4 227 VRIMKRFNVSGSYTLNIPYQFAMEHL--PNCKTELVLQNLKGACWTVNSVPtTRVHTSHTLCGGWLSFVRSNEIKAGDICIFELVH--KFE 313 56667778888899********9996..45899***************954566666799***********************987..788 PP .EEEEE- CS B3 92 lvvkvfr 98 ++v+++r Gorai.005G105400.4 314 FRVHILR 320 8999987 PP | |||||||
3 | B3 | 49.8 | 6.1e-16 | 438 | 518 | 13 | 96 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 s l +p kf +eh + ++++++l++++g+ W+v+ + k+++ +++ +GW Fv++n++k gD+++F+l+++ e++v++ Gorai.005G105400.4 438 SYTLKIPYKFSKEHL--PYCKTQVVLRNLQGKCWTVNSLPDSKGRAvHTFCGGWMAFVRDNEIKIGDICIFELVNN--YEMRVHI 518 45699*********4..346778***************6655555579999*********************9875..3345555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.9E-23 | 2 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-23 | 2 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.63E-16 | 7 | 98 | No hit | No description |
PROSITE profile | PS50863 | 15.368 | 7 | 100 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-14 | 9 | 100 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-15 | 11 | 99 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-23 | 217 | 320 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.82E-24 | 219 | 321 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.02E-19 | 224 | 320 | No hit | No description |
PROSITE profile | PS50863 | 13.465 | 226 | 322 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.8E-15 | 226 | 322 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-14 | 226 | 320 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-23 | 418 | 520 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.75E-24 | 420 | 521 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.16E-19 | 424 | 518 | No hit | No description |
PROSITE profile | PS50863 | 13.521 | 426 | 522 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.0E-12 | 426 | 522 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-13 | 435 | 517 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MSKPRRPHFL NVFSSTSSAN SLRIPVGFNR NLEGRVSASV LLKGPSGYSW NVKLVQRNDD 60 LLFDEGWADF VADHSLECGD FLVFRYDGDL VFEVKVFDQS SCEKEVAFHC KCSQAGSVFN 120 GILGQKRYRE EEDVSLDQDC EELLKRIRQS SSESVRDEEH CGRELILATT SCQGLTSCDE 180 NHDGTILKIT GKEDDLNLHG SGCIQMIGEF EEKKVAQSFN SCFPFFVRIM KRFNVSGSYT 240 LNIPYQFAME HLPNCKTELV LQNLKGACWT VNSVPTTRVH TSHTLCGGWL SFVRSNEIKA 300 GDICIFELVH KFEFRVHILR VGQEDLDRQS RKAVLDRSDS TLLKKLVKNT SKVHSKLKKV 360 QICDNKGSKV LDKWKYGNAA KKSASFVLCS LSRSGTEKQA ISGLRMMMTV DEEKAARSFA 420 SRFPSFVRIM RKFNISGSYT LKIPYKFSKE HLPYCKTQVV LRNLQGKCWT VNSLPDSKGR 480 AVHTFCGGWM AFVRDNEIKI GDICIFELVN NYEMRVHISG PGRKGLDRQH TSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 8e-14 | 8 | 102 | 10 | 104 | At1g16640 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012478064.1 | 0.0 | PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X2 | ||||
TrEMBL | A0A0D2PR20 | 0.0 | A0A0D2PR20_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G105400.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-21 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G105400.4 |
Entrez Gene | 105793765 |
Publications ? help Back to Top | |||
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