PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G105200.1

Common Name

B456_005G105200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 271aa MW: 28128.4 Da PI: 8.1953

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G105200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.7	2.5e-38	26	85	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ l+cprCdst tkfCyynny+lsqPryfCk+CrryWt+GG+lrnvPvGgg+rk+ k+s Gorai.005G105200.1 26 TEPLPCPRCDSTSTKFCYYNNYNLSQPRYFCKSCRRYWTQGGTLRNVPVGGGTRKSSKRS 85 57899**************************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-23	27	79	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.8E-33	28	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.18	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MPAGSGDRRP VRAPGTMGSH PAAKLTEPLP CPRCDSTSTK FCYYNNYNLS QPRYFCKSCR 60 RYWTQGGTLR NVPVGGGTRK SSKRSRSSSS LLSPSVATSS SSSVTHEAES VHMAVNPVSA 120 MPATGVKPEV GLADVNLNDT VDLPVSGGFT SFLNSQAEGY LTLGGYGLGT GSGFDGVWGY 180 PGNGYLGVYN GGDGDEPAEA VPGATGCNTW QATGNVEGGG GLVDGDCFGW PGLAISAPGK 240 AGHSRVMRMS AGFSYQLFNH YLIIPRGIFC *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012482790.1	1e-174	PREDICTED: dof zinc finger protein DOF1.6-like
TrEMBL	A0A0D2SEA6	0.0	A0A0D2SEA6_GOSRA; Uncharacterized protein
STRING	Gorai.005G105200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9465	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47655.1	1e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G105200.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]