PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G102300.4

Common Name

B456_005G102300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 357aa MW: 38106.9 Da PI: 9.832

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G102300.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.7	4.5e-07	325	345	5	25
CHHHCHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKk 25 +r+rr++kNRe+A rsR+RK+ Gorai.005G102300.4 325 RRQRRMIKNRESAARSRARKQ 345 79******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14707	1.30E-13	325	348	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.7E-5	325	347	No hit	No description
PROSITE pattern	PS00036	0	328	343	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MEANMKLKNF GSNQPLPADG GGNTLLSRQP SIYSLTFDEF QSTMGGIGKD FGSMNMDELL 60 KNIWSAEETQ TMAFYSGGLD AYGGLQRQGS LTLPRTLSQK TVDEVWKDIS KEYSIGKDGI 120 GTAAGTNHVP QRYQTLGEMT LEEFLVKAGV VREDTQFAGK DNNVNGGFFD GFQQGGRTPN 180 FMGNRLSEVG FQASNLPLNV NGVKSNQHQL PQQQQPIFPR QPAVGFGIQM PLQSGGQLGS 240 PGNRGGITGM GDQGPPNGLI QGGKMGMVGL GGPVSVATGS PANHFSSDGI GKSSADTSSV 300 SPVPYVLNGS SRGRKCSAVE KVAERRQRRM IKNRESAARS RARKQVTICL IYFILV*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MEANMKLKNF GSNQPLPADG GGNTLLSRQP SIYSLTFDEF QSTMGGIGKD FGSMNMDELL  60
KNIWSAEETQ TMAFYSGGLD AYGGLQRQGS LTLPRTLSQK TVDEVWKDIS KEYSIGKDGI  120
GTAAGTNHVP QRYQTLGEMT LEEFLVKAGV VREDTQFAGK DNNVNGGFFD GFQQGGRTPN  180
FMGNRLSEVG FQASNLPLNV NGVKSNQHQL PQQQQPIFPR QPAVGFGIQM PLQSGGQLGS  240
PGNRGGITGM GDQGPPNGLI QGGKMGMVGL GGPVSVATGS PANHFSSDGI GKSSADTSSV  300
SPVPYVLNGS SRGRKCSAVE KVAERRQRRM IKNRESAARS RARKQVTICL IYFILV*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012482747.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9M7Q4	4e-97	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A0D2PQV7	0.0	A0A0D2PQV7_GOSRA; Uncharacterized protein
STRING	Gorai.005G102300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.2	2e-87	abscisic acid responsive elements-binding factor 2

Link Out ? help Back to Top
Phytozome	Gorai.005G102300.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]