PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G100600.1
Common NameB456_005G100600, LOC105797306
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 312aa    MW: 35178.5 Da    PI: 5.3064
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G100600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.73.1e-28958150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+l  +s
  Gorai.005G100600.1  9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFS 58
                        79********************************************9887 PP
2K-box294.6e-11107172472
               K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 
                         +s +  ++++ e+lqqe+ k k++i  +qr +R + Ge++++Ls  e +  eq Le+ l+++R +K+ l
  Gorai.005G100600.1 107 ASPE-STDSQLEELQQEIVKCKSRIADIQRRLRIFEGEEITTLSQAEFH--EQILEETLQQVRLRKQGL 172
                         3333.68999*************************************98..9**************866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.955161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-31279IPR002100Transcription factor, MADS-box
CDDcd002653.58E-38275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-26323IPR002100Transcription factor, MADS-box
PfamPF003194.1E-261055IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-263859IPR002100Transcription factor, MADS-box
PfamPF014864.8E-6111175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSLFSRN  60
KSIEEILERY VNLPEHERGR LRNEEFLLKA LGKLRDEADQ IQTYQAASPE STDSQLEELQ  120
QEIVKCKSRI ADIQRRLRIF EGEEITTLSQ AEFHEQILEE TLQQVRLRKQ GLQEKATSSS  180
SALDWIRKKD PQVHSLNFLE SNGLLPQRDE CQSVAENILP PLDGEEIINV GDQLSPTRSG  240
LDNSNNMQRT ELGQVNNVNL SPWTELYSTV AGNDSFPDGQ PAAGGGGRAL LELYVSQFTQ  300
SAISTMNQHH T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-18177177MEF2 CHIMERA
6byy_B6e-18177177MEF2 CHIMERA
6byy_C6e-18177177MEF2 CHIMERA
6byy_D6e-18177177MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5836423e-74JX583642.1 Gossypium hirsutum clone NBRI_GE16735 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482721.10.0PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X1
SwissprotQ9LM464e-47AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A0D2RC940.0A0A0D2RC94_GOSRA; Uncharacterized protein
STRINGGorai.005G100600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1619969
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.13e-49AGAMOUS-like 104
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]