PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G098700.1

Common Name

B456_005G098700, LOC105797283

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRF

Protein Properties

Length: 570aa MW: 61671.2 Da PI: 7.1046

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G098700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.2	1.6e-24	215	259	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Gorai.005G098700.1 215 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 259 79****************************************985 PP
2	QLQ	59.7	8.3e-21	144	180	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT +Q+++L++Q+l+yKy+ an+P+P+ Ll +i+k Gorai.005G098700.1 144 GPFTSSQWMELEHQALIYKYMTANVPIPSTLLIPIKK 180 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.4E-12	144	180	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.862	145	180	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.7E-14	145	178	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.663	215	259	IPR014977	WRC domain
Pfam	PF08879	6.7E-21	216	258	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MDFGVVGLEG IVGSETSNGF TLVASESETK QKLYGSAFLK QERSGSSEDD WRTSKLAKFD 60 DISASKAVLS QHRNTLFRSN TSIFFDGQQQ QQMLSFSAPK SEALSMGRSS QNVIFPYFHL 120 TSPACTRNTG YNTGGFNGAN MNGGPFTSSQ WMELEHQALI YKYMTANVPI PSTLLIPIKK 180 ALDSAGFSSF SGGLLRPNTS VGWGAFHLGF SNNTDPEPGR CRRTDGKKWR CSRDAVADQK 240 YCERHMNRGR HRSRKPVEGQ SGCSTASTTT TTTKLMHSVS SSSASVVGPN GGNGESNSLT 300 IAQQQFKNLQ PAGESNLSHS GPLNRWLLNK ESIGERMHDT AHGNEFGVVS SESLLNPSHK 360 SSSLVKCINF DCSQDLDSQE TESHRSVRQF FDAWPKTQSD CSSIFLPEAD VQSDRTQLSI 420 SMPMALSDFM SSTSSPNNED VTHSPLQLTR ELDPIQMGLE VGSVGNETNW RQANWIPISR 480 ETSVGGPLGE VLHSTNSSSA ECKNSSAVNL MTEKCDHSPR LGSSPTGVLQ KTMFGSHSNS 540 SAGSSPRAEN NKNDLLGSTI VHSSSLPAL*

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MDFGVVGLEG IVGSETSNGF TLVASESETK QKLYGSAFLK QERSGSSEDD WRTSKLAKFD  60
DISASKAVLS QHRNTLFRSN TSIFFDGQQQ QQMLSFSAPK SEALSMGRSS QNVIFPYFHL  120
TSPACTRNTG YNTGGFNGAN MNGGPFTSSQ WMELEHQALI YKYMTANVPI PSTLLIPIKK  180
ALDSAGFSSF SGGLLRPNTS VGWGAFHLGF SNNTDPEPGR CRRTDGKKWR CSRDAVADQK  240
YCERHMNRGR HRSRKPVEGQ SGCSTASTTT TTTKLMHSVS SSSASVVGPN GGNGESNSLT  300
IAQQQFKNLQ PAGESNLSHS GPLNRWLLNK ESIGERMHDT AHGNEFGVVS SESLLNPSHK  360
SSSLVKCINF DCSQDLDSQE TESHRSVRQF FDAWPKTQSD CSSIFLPEAD VQSDRTQLSI  420
SMPMALSDFM SSTSSPNNED VTHSPLQLTR ELDPIQMGLE VGSVGNETNW RQANWIPISR  480
ETSVGGPLGE VLHSTNSSSA ECKNSSAVNL MTEKCDHSPR LGSSPTGVLQ KTMFGSHSNS  540
SAGSSPRAEN NKNDLLGSTI VHSSSLPAL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF042296	6e-58	KF042296.1 Codiaeum variegatum GRF2 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012482695.1	0.0	PREDICTED: growth-regulating factor 1-like isoform X1
TrEMBL	A0A0D2PQP7	0.0	A0A0D2PQP7_GOSRA; Uncharacterized protein
STRING	Gorai.005G098700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1454	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-91	growth-regulating factor 1

Link Out ? help Back to Top
Phytozome	Gorai.005G098700.1
Entrez Gene	105797283

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]