PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G098100.1
Common NameB456_005G098100, LOC105797275
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 311aa    MW: 35621 Da    PI: 7.6535
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G098100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-092362712055
                         HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Gorai.005G098100.1 236 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 271
                         5679*****************************885 PP
2ELK36.88.3e-13191212122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK+qLlrKY+gyL+sLkqE+s
  Gorai.005G098100.1 191 ELKNQLLRKYRGYLSSLKQELS 212
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.7E-204791IPR005540KNOX1
PfamPF037901.3E-214990IPR005540KNOX1
SMARTSM012566.6E-2099150IPR005541KNOX2
PfamPF037913.4E-19105147IPR005541KNOX2
SMARTSM01188750108128IPR005539ELK domain
SMARTSM011881.1E-6191212IPR005539ELK domain
PfamPF037891.7E-9191212IPR005539ELK domain
PROSITE profilePS5121311.278191211IPR005539ELK domain
PROSITE profilePS5007113.005211274IPR001356Homeobox domain
SuperFamilySSF466891.03E-19212287IPR009057Homeodomain-like
SMARTSM003896.2E-12213278IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-27216277IPR009057Homeodomain-like
CDDcd000865.29E-11223275No hitNo description
PfamPF059201.1E-16231270IPR008422Homeobox KN domain
PROSITE patternPS000270249272IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEEFNRVNGN SIPKGNFVYA SAVVATETNT SQNPPKLHLL RDQQEAEDMK AKIIAHPHCS  60
NLFEAYMDCQ KVGAPPEVAA RLAAARQEFE ARRGSAVSST RDTIKDPELD QFMEAYYGML  120
VKYRDELMRP MQEALDFTRR TEAQLNRVSN GLVQIFNSDE KCDGVGSSEE EENNNHSNGE  180
TRTDPRAEDR ELKNQLLRKY RGYLSSLKQE LSKKKKKGKL PKESRQKLLT WWELHYKWPY  240
PSETEKVALA ESTGLDQKQI NNWFINQRKR HWKPSEDSQF MVMDGLHSPN AVLYMDGHYM  300
GGGPYRPGPS *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the apical meristems, in the newly emerged lateral primordia in the floral bud, in their vascular bundles and in the cortex parenchyma of the floral pedicle. Also present in the lateral tips of leaf primordia.
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482686.10.0PREDICTED: homeotic protein knotted-1-like
SwissprotQ413301e-138KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA0A0D2SDV30.0A0A0D2SDV3_GOSRA; Uncharacterized protein
STRINGGorai.005G098100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65662335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-99KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]