PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G097100.1
Common NameB456_005G097100, LOC105797264
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 286aa    MW: 30656.1 Da    PI: 6.0299
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G097100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.61.3e-16195231135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg ++  Tp++Rrgp+g+++LCnaCGl+++ kg+
  Gorai.005G097100.1 195 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANKGT 231
                         *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009796.1E-96398IPR010399Tify domain
PROSITE profilePS5132013.0436398IPR010399Tify domain
PfamPF062003.0E-106697IPR010399Tify domain
PROSITE profilePS5101712.531130172IPR010402CCT domain
PfamPF062034.2E-16130172IPR010402CCT domain
SMARTSM004013.5E-16189242IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-11193240No hitNo description
Gene3DG3DSA:3.30.50.101.5E-15194235IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.69E-16194241No hitNo description
PROSITE profilePS501149.671195248IPR000679Zinc finger, GATA-type
PfamPF003201.6E-14195231IPR000679Zinc finger, GATA-type
PROSITE patternPS003440195222IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MYGQSQPMNI PASIADNDVS ASAPADSVSY DADPLDDGVG VDDVSADPLY VTSTPSDLAI  60
VQRVDGASQL TLSFRGQVYV FDAITPEKFH AVLLLLGGSE LTSGPHGVEM SAQNQRVVLD  120
FPRGSNQPHR AASLDRFRQK RKERCFDKKV RYSVRQEVAL RMQRNKGQFT SAKKSEGAHS  180
WGSSQEDDNL ADGICTHCGI SSKSTPMMRR GPSGPRSLCN ACGLFWANKG TLRDIPKKTQ  240
DLSLVPVQQG ECETNDSNSG TAIPTTQSNV VSFSNGDGSA LIAEN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482676.10.0PREDICTED: GATA transcription factor 25
SwissprotQ9LRH69e-82GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A0D2SDT10.0A0A0D2SDT1_GOSRA; Uncharacterized protein
STRINGGorai.005G097100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.28e-75GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]