PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G093000.1
Common NameB456_005G093000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 328aa    MW: 37688.1 Da    PI: 5.2311
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G093000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.21.9e-27958150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g++  +s
  Gorai.005G093000.1  9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRISHFS 58
                        79*******************************************99987 PP
2K-box18.86.7e-081091711678
               K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                         + qqe+ +L++++++ + ++R +  +     s+ eL++ e++L + l ++ ++K+ +l ++++
  Gorai.005G093000.1 109 EIQQEIVRLQQQLQMAEDQLRAYEPDPFRFTSMAELESCEKHLVETLANVVQRKEYILSNHLS 171
                         68********************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.688161IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-29285IPR002100Transcription factor, MADS-box
CDDcd002651.57E-35275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRISHFSGR  60
RRIEDVFMRY INLPDREREH DIQNKEYMLR ILQQLRSEND VALQLAKFEI QQEIVRLQQQ  120
LQMAEDQLRA YEPDPFRFTS MAELESCEKH LVETLANVVQ RKEYILSNHL SSYDPSPIQQ  180
GLPPSFENEV VNWLPDNGQN QSQIFDASAS LNPLRDFSST VYDPLLQGSM SNVDPHNIGD  240
QCHVSNPNTE NFAPWPRSFA STGLQSNSMP PTLYSHVQHG MVSHQEMAEM VPNDQQMEIP  300
GNYNSHGQMA DNEGSNYENR VHEHDGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A3e-16270168Myocyte-specific enhancer factor 2A
3mu6_B3e-16270168Myocyte-specific enhancer factor 2A
3mu6_C3e-16270168Myocyte-specific enhancer factor 2A
3mu6_D3e-16270168Myocyte-specific enhancer factor 2A
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6165294e-61JX616529.1 Gossypium hirsutum clone NBRI_GE61266 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481191.10.0PREDICTED: MADS-box transcription factor ANR1-like
SwissprotQ9LM461e-113AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A0D2RI520.0A0A0D2RI52_GOSRA; Uncharacterized protein
STRINGGorai.005G093000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-106AGAMOUS-like 104
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]