PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G087600.2
Common NameB456_005G087600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 260aa    MW: 30250.1 Da    PI: 9.4959
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G087600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.32.4e-2959109151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                         krien+snrqvt+skRrngi+KKA+E+ vLCda+v++iif+s+gk++ey+s
  Gorai.005G087600.2  59 KRIENSSNRQVTYSKRRNGIMKKAKEITVLCDAKVSLIIFASSGKMHEYCS 109
                         79***********************************************96 PP
2K-box88.11.7e-29121215195
               K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                         yqk+sgk+l++ak+e+l++e++++kke++++q e+Rhl+Ged++sL +keL+ Le++Le++l+ +R+k++++l +  ++++  e+++++ n
  Gorai.005G087600.2 121 YQKTSGKKLWDAKHENLSNEIDRIKKENDSMQIELRHLKGEDITSLPYKELMALEDALENGLTCVRAKQMDVLDMAKKNTKFLEEDNKQLN 211
                         899**************************************************************************************99 PP

               K-box  92 kaLr 95 
                            +
  Gorai.005G087600.2 212 FIVQ 215
                         8665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.4E-4151110IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.53451111IPR002100Transcription factor, MADS-box
CDDcd002651.27E-4152130No hitNo description
SuperFamilySSF554551.2E-3652146IPR002100Transcription factor, MADS-box
PROSITE patternPS00350053107IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-285373IPR002100Transcription factor, MADS-box
PfamPF003198.0E-2360107IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-287388IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-2888109IPR002100Transcription factor, MADS-box
PfamPF014864.5E-19132211IPR002487Transcription factor, K-box
PROSITE profilePS5129713.959134220IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MQISKPEIEC LKLLVFLSWL LSLNLILCSI PHHFTTKKHQ SKEVEREKSK MGRGKIEIKR  60
IENSSNRQVT YSKRRNGIMK KAKEITVLCD AKVSLIIFAS SGKMHEYCSP STKLIDILDQ  120
YQKTSGKKLW DAKHENLSNE IDRIKKENDS MQIELRHLKG EDITSLPYKE LMALEDALEN  180
GLTCVRAKQM DVLDMAKKNT KFLEEDNKQL NFIVQLTYEN VREHMDHHGY HRAARADFNS  240
QMPFAFRVQP MQPNLQERM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A4e-1751141183MEF2 CHIMERA
6bz1_B4e-1751141183MEF2 CHIMERA
6bz1_C4e-1751141183MEF2 CHIMERA
6bz1_D4e-1751141183MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4098690.0FJ409869.1 Gossypium hirsutum MADS-12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482533.11e-154PREDICTED: floral homeotic protein PMADS 2-like
RefseqXP_016693674.11e-154PREDICTED: floral homeotic protein PMADS 2-like
RefseqXP_017648636.11e-154PREDICTED: floral homeotic protein PMADS 2-like
SwissprotQ0HA251e-113MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A0D2RHS10.0A0A0D2RHS1_GOSRA; Uncharacterized protein
STRINGGorai.005G087600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.13e-88MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]