PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.005G087600.1 | ||||||||
Common Name | B456_005G087600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 263aa MW: 30620.4 Da PI: 9.4959 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.2 | 2.4e-29 | 59 | 109 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skRrngi+KKA+E+ vLCda+v++iif+s+gk++ey+s Gorai.005G087600.1 59 KRIENSSNRQVTYSKRRNGIMKKAKEITVLCDAKVSLIIFASSGKMHEYCS 109 79***********************************************96 PP | |||||||
2 | K-box | 87.4 | 2.9e-29 | 121 | 217 | 1 | 97 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 yqk+sgk+l++ak+e+l++e++++kke++++q e+Rhl+Ged++sL +keL+ Le++Le++l+ +R+k++++l + ++++ e+++++ n Gorai.005G087600.1 121 YQKTSGKKLWDAKHENLSNEIDRIKKENDSMQIELRHLKGEDITSLPYKELMALEDALENGLTCVRAKQMDVLDMAKKNTKFLEEDNKQLN 211 899***************************************************************************************9 PP K-box 92 kaLrkk 97 +++ Gorai.005G087600.1 212 FIVNQQ 217 988776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.4E-41 | 51 | 110 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.534 | 51 | 111 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.24E-36 | 52 | 146 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.13E-41 | 52 | 130 | No hit | No description |
PRINTS | PR00404 | 1.5E-28 | 53 | 73 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 53 | 107 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.1E-23 | 60 | 107 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-28 | 73 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-28 | 88 | 109 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.7E-19 | 132 | 211 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.242 | 134 | 220 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 263 aa Download sequence Send to blast |
MQISKPEIEC LKLLVFLSWL LSLNLILCSI PHHFTTKKHQ SKEVEREKSK MGRGKIEIKR 60 IENSSNRQVT YSKRRNGIMK KAKEITVLCD AKVSLIIFAS SGKMHEYCSP STKLIDILDQ 120 YQKTSGKKLW DAKHENLSNE IDRIKKENDS MQIELRHLKG EDITSLPYKE LMALEDALEN 180 GLTCVRAKQM DVLDMAKKNT KFLEEDNKQL NFIVNQQQLT YENVREHMDH HGYHRAARAD 240 FNSQMPFAFR VQPMQPNLQE RM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 4e-17 | 51 | 141 | 1 | 83 | MEF2 CHIMERA |
6bz1_B | 4e-17 | 51 | 141 | 1 | 83 | MEF2 CHIMERA |
6bz1_C | 4e-17 | 51 | 141 | 1 | 83 | MEF2 CHIMERA |
6bz1_D | 4e-17 | 51 | 141 | 1 | 83 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788, ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00080 | ChIP-seq | Transfer from AT5G20240 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FJ409869 | 0.0 | FJ409869.1 Gossypium hirsutum MADS-12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012482533.1 | 1e-159 | PREDICTED: floral homeotic protein PMADS 2-like | ||||
Refseq | XP_016693674.1 | 1e-159 | PREDICTED: floral homeotic protein PMADS 2-like | ||||
Refseq | XP_017648636.1 | 1e-159 | PREDICTED: floral homeotic protein PMADS 2-like | ||||
Swissprot | Q0HA25 | 1e-115 | MADS9_VITVI; Agamous-like MADS-box protein MADS9 | ||||
TrEMBL | A0A0D2N9L7 | 0.0 | A0A0D2N9L7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G087600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5300 | 27 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G20240.1 | 5e-90 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.005G087600.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|