PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G083700.7

Common Name

B456_005G083700, LOC105797101

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 556aa MW: 61649.1 Da PI: 5

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G083700.7	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	442.4	3.1e-135	187	554	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 + L+ecA +s+g+ e+a+a++++l++ +s +gdp qR+aay++e+Laar+a s++ lykal+++e + ss++laa+++++ev+P++kf Gorai.005G083700.7 187 QMLIECAAILSEGHIEKASAIINELRQKVSIQGDPPQRIAAYMVEGLAARMAASGKCLYKALRCKEPP---SSDRLAAMQILFEVCPCFKF 274 79***************************************************************9...9*************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182 ++++aN aI ea++ge+rvHiiDfdisqG Q+++L+q++a+ p++pp+lR+Tgv++pes+ + le +g rL+k+Ae lgvpfef++ v Gorai.005G083700.7 275 GFMAANGAIIEAFKGEKRVHIIDFDISQGSQYITLIQTIAKLPGKPPHLRLTGVDDPESVqrLNGGLEIVGLRLEKLAEILGVPFEFRA-V 364 ******************************************************99777889*******************.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 +r++ + +++L++kpgEal+Vn+++ lh+++desvs+ ++rd++L++vks++Pk+v+vveq++++n+++F+ rf+ea +yysa+fdsl+a Gorai.005G083700.7 365 PSRTSLVAPSMLDCKPGEALIVNFAFLLHHMPDESVSTINQRDQLLRMVKSMNPKLVTVVEQDVNTNTSPFFPRFIEAYSYYSAVFDSLDA 455 *************************************************************************************** PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364 +lpres++r++vEr++l+r+ivn++aceg+er+er e ++kWr+r+ +aGFk+ p+s+++ ++++ l++++ ++ y+++e+ g+l +gW+d Gorai.005G083700.7 456 TLPRESQDRMNVERQCLARDIVNIIACEGEERIERYEVAGKWRARMIMAGFKSCPMSSNVIDTIQKLIKEYCDR-YKLKEDVGALHFGWED 545 ********************************************************************66.************ PP GRAS 365 rpLvsvSaW 373 ++L+++SaW Gorai.005G083700.7 546 KSLIVASAW 554 ******* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.423	159	536	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-132	187	554	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
MSLVRSAEPA TASCRNTNLY SIQDSSDSTG MAIRMFGSDK HKPVYVMDSY SSESYEKYFL 60 DSPTDELIHS SSSGISGSSV RLQDVSSCQI RDYLEIQSPD TLDSDSDKMK LKLKELERAL 120 LADNDVDGDD DMFGTGLSME VDGEWSDPIR MGSHHDSPKE SSSSGTYLDS VSGNKEVSHV 180 SSQTPKQMLI ECAAILSEGH IEKASAIINE LRQKVSIQGD PPQRIAAYMV EGLAARMAAS 240 GKCLYKALRC KEPPSSDRLA AMQILFEVCP CFKFGFMAAN GAIIEAFKGE KRVHIIDFDI 300 SQGSQYITLI QTIAKLPGKP PHLRLTGVDD PESVQRLNGG LEIVGLRLEK LAEILGVPFE 360 FRAVPSRTSL VAPSMLDCKP GEALIVNFAF LLHHMPDESV STINQRDQLL RMVKSMNPKL 420 VTVVEQDVNT NTSPFFPRFI EAYSYYSAVF DSLDATLPRE SQDRMNVERQ CLARDIVNII 480 ACEGEERIER YEVAGKWRAR MIMAGFKSCP MSSNVIDTIQ KLIKEYCDRY KLKEDVGALH 540 FGWEDKSLIV ASAWS*

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

MSLVRSAEPA TASCRNTNLY SIQDSSDSTG MAIRMFGSDK HKPVYVMDSY SSESYEKYFL  60
DSPTDELIHS SSSGISGSSV RLQDVSSCQI RDYLEIQSPD TLDSDSDKMK LKLKELERAL  120
LADNDVDGDD DMFGTGLSME VDGEWSDPIR MGSHHDSPKE SSSSGTYLDS VSGNKEVSHV  180
SSQTPKQMLI ECAAILSEGH IEKASAIINE LRQKVSIQGD PPQRIAAYMV EGLAARMAAS  240
GKCLYKALRC KEPPSSDRLA AMQILFEVCP CFKFGFMAAN GAIIEAFKGE KRVHIIDFDI  300
SQGSQYITLI QTIAKLPGKP PHLRLTGVDD PESVQRLNGG LEIVGLRLEK LAEILGVPFE  360
FRAVPSRTSL VAPSMLDCKP GEALIVNFAF LLHHMPDESV STINQRDQLL RMVKSMNPKL  420
VTVVEQDVNT NTSPFFPRFI EAYSYYSAVF DSLDATLPRE SQDRMNVERQ CLARDIVNII  480
ACEGEERIER YEVAGKWRAR MIMAGFKSCP MSSNVIDTIQ KLIKEYCDRY KLKEDVGALH  540
FGWEDKSLIV ASAWS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-66	191	555	25	379	Protein SCARECROW
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012482485.1	0.0	PREDICTED: scarecrow-like protein 1 isoform X1
Swissprot	Q9SDQ3	0.0	SCL1_ARATH; Scarecrow-like protein 1
TrEMBL	A0A0D2N9G3	0.0	A0A0D2N9G3_GOSRA; Uncharacterized protein
STRING	Gorai.005G083700.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	0.0	SCARECROW-like 1

Link Out ? help Back to Top
Phytozome	Gorai.005G083700.7
Entrez Gene	105797101

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]