PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G083700.3
Common NameB456_005G083700, LOC105797101
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 572aa    MW: 63524.2 Da    PI: 5.1366
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G083700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS442.33.3e-1352035703373
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         + L+ecA  +s+g+ e+a+a++++l++ +s +gdp qR+aay++e+Laar+a s++ lykal+++e +   ss++laa+++++ev+P++kf
  Gorai.005G083700.3 203 QMLIECAAILSEGHIEKASAIINELRQKVSIQGDPPQRIAAYMVEGLAARMAASGKCLYKALRCKEPP---SSDRLAAMQILFEVCPCFKF 290
                         79*****************************************************************9...9******************* PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                         ++++aN aI ea++ge+rvHiiDfdisqG Q+++L+q++a+ p++pp+lR+Tgv++pes+   +  le +g rL+k+Ae lgvpfef++ v
  Gorai.005G083700.3 291 GFMAANGAIIEAFKGEKRVHIIDFDISQGSQYITLIQTIAKLPGKPPHLRLTGVDDPESVqrLNGGLEIVGLRLEKLAEILGVPFEFRA-V 380
                         **********************************************************99777889***********************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                          +r++ + +++L++kpgEal+Vn+++ lh+++desvs+ ++rd++L++vks++Pk+v+vveq++++n+++F+ rf+ea +yysa+fdsl+a
  Gorai.005G083700.3 381 PSRTSLVAPSMLDCKPGEALIVNFAFLLHHMPDESVSTINQRDQLLRMVKSMNPKLVTVVEQDVNTNTSPFFPRFIEAYSYYSAVFDSLDA 471
                         ******************************************************************************************* PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                         +lpres++r++vEr++l+r+ivn++aceg+er+er e ++kWr+r+ +aGFk+ p+s+++ ++++ l++++ ++ y+++e+ g+l +gW+d
  Gorai.005G083700.3 472 TLPRESQDRMNVERQCLARDIVNIIACEGEERIERYEVAGKWRARMIMAGFKSCPMSSNVIDTIQKLIKEYCDR-YKLKEDVGALHFGWED 561
                         ************************************************************************66.**************** PP

                GRAS 365 rpLvsvSaW 373
                         ++L+++SaW
  Gorai.005G083700.3 562 KSLIVASAW 570
                         ********* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.423175552IPR005202Transcription factor GRAS
PfamPF035141.2E-132203570IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MHQQPFYNST VQRVGTMSLV RSAEPATASC RNTNLYSIQD SSDSTGMAIR MFGSDKHKPV  60
YVMDSYSSES YEKYFLDSPT DELIHSSSSG ISGSSVRLQD VSSCQIRDYL EIQSPDTLDS  120
DSDKMKLKLK ELERALLADN DVDGDDDMFG TGLSMEVDGE WSDPIRMGSH HDSPKESSSS  180
GTYLDSVSGN KEVSHVSSQT PKQMLIECAA ILSEGHIEKA SAIINELRQK VSIQGDPPQR  240
IAAYMVEGLA ARMAASGKCL YKALRCKEPP SSDRLAAMQI LFEVCPCFKF GFMAANGAII  300
EAFKGEKRVH IIDFDISQGS QYITLIQTIA KLPGKPPHLR LTGVDDPESV QRLNGGLEIV  360
GLRLEKLAEI LGVPFEFRAV PSRTSLVAPS MLDCKPGEAL IVNFAFLLHH MPDESVSTIN  420
QRDQLLRMVK SMNPKLVTVV EQDVNTNTSP FFPRFIEAYS YYSAVFDSLD ATLPRESQDR  480
MNVERQCLAR DIVNIIACEG EERIERYEVA GKWRARMIMA GFKSCPMSSN VIDTIQKLIK  540
EYCDRYKLKE DVGALHFGWE DKSLIVASAW S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-6620757124378Protein SCARECROW
5b3h_D3e-6620757124378Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482485.10.0PREDICTED: scarecrow-like protein 1 isoform X1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0D2N9G30.0A0A0D2N9G3_GOSRA; Uncharacterized protein
STRINGGorai.005G083700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]