PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G078500.3 | ||||||||
Common Name | B456_005G078500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 249aa MW: 26750.9 Da PI: 5.2185 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 20.7 | 8.9e-07 | 219 | 243 | 3 | 27 |
XXCHHHCHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkae 27 + +r+rr++kNRe+A rsR+RK + Gorai.005G078500.3 219 AQQRQRRMIKNRESAARSRERKHTK 243 679*******************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 6.5E-6 | 215 | 243 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 224 | 239 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MASSTSNSRN SDLSRRSTTS SSTKPLLLTD QKTNDDNENR LSSTMTVDGI LRNVYSVATS 60 TETTLVDASI TLIDAPIPNS VSDNPEVPQV QTVADCNNNV AKSVDEVWRE IVSGERKEIT 120 MKEEVPDEMM TLEDFLAKAG AVEEAAAVAS AEVKLHPDRL SGGVYTFDPV GGGAFQILDK 180 MEGSIVGLGN GMEVIGSGGG GGRGKRGRGV LMEPLDKAAQ QRQRRMIKNR ESAARSRERK 240 HTKLNWNP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.1978 | 0.0 | flower| flowering |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48802295 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF651785 | 0.0 | EF651785.1 Gossypium hirsutum transcription factor TF3 (TF3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012482412.1 | 1e-174 | PREDICTED: G-box-binding factor 4 isoform X1 | ||||
Swissprot | P42777 | 1e-35 | GBF4_ARATH; G-box-binding factor 4 | ||||
TrEMBL | A0A0D2N978 | 0.0 | A0A0D2N978_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G078500.1 | 1e-173 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44080.1 | 9e-33 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G078500.3 |
Publications ? help Back to Top | |||
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