PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G078500.1
Common NameB456_005G078500, LOC105797033
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 302aa    MW: 33277.6 Da    PI: 5.6442
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G078500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.22e-14219279362
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklkse 62 
                         + +r+rr++kNRe+A rsR+RK+a++ eLe  + +Le+eN+ L k+++e+ k+  ++l  +
  Gorai.005G078500.1 219 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENEWLlKEKAERTKERFKQLMEK 279
                         679**************************************86267788888888887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.0E-9217281IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.473219271IPR004827Basic-leucine zipper domain
PfamPF001705.4E-13219279IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.76E-9221272No hitNo description
CDDcd147071.79E-17221267No hitNo description
Gene3DG3DSA:1.20.5.1707.5E-12222276No hitNo description
PROSITE patternPS000360224239IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MASSTSNSRN SDLSRRSTTS SSTKPLLLTD QKTNDDNENR LSSTMTVDGI LRNVYSVATS  60
TETTLVDASI TLIDAPIPNS VSDNPEVPQV QTVADCNNNV AKSVDEVWRE IVSGERKEIT  120
MKEEVPDEMM TLEDFLAKAG AVEEAAAVAS AEVKLHPDRL SGGVYTFDPV GGGAFQILDK  180
MEGSIVGLGN GMEVIGSGGG GGRGKRGRGV LMEPLDKAAQ QRQRRMIKNR ESAARSRERK  240
QAYQVELESL AVKLEEENEW LLKEKAERTK ERFKQLMEKV VPVVEQRRPP RMLRRVRSLQ  300
W*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.19780.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488022950.0
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6517850.0EF651785.1 Gossypium hirsutum transcription factor TF3 (TF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482412.10.0PREDICTED: G-box-binding factor 4 isoform X1
SwissprotP427772e-64GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A0D2RHB40.0A0A0D2RHB4_GOSRA; Uncharacterized protein
STRINGGorai.005G078500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.11e-42bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]