PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G075000.1 | ||||||||
Common Name | B456_005G075000, LOC105796994 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 493aa MW: 54788.4 Da PI: 6.5339 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.1 | 8.1e-07 | 250 | 271 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Gorai.005G075000.1 250 FCTICGKGFKRDANLRMHMRGH 271 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.14E-5 | 247 | 274 | No hit | No description |
SMART | SM00355 | 0.0026 | 249 | 271 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.03 | 249 | 276 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.8E-6 | 250 | 300 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 251 | 271 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 61 | 298 | 331 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 39 | 336 | 358 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MDHRDRQSIE HQKKDPQQHP HPCFTNFTTH HQQQKWEDPS LLDYSTRIEP PFQAFNPNCQ 60 TKSSFPCNPN NQIKVPDPLM NELLQASKVQ DWDPSAMLNN LSFLEQKIHQ LQGLVHSIIG 120 RGGQVLGQPD ELVDQQQQLI TAALTSIIVQ LISTAGSLLP SVKHHTLCGA PPVASLAQFQ 180 PQNGGGNSVP ELPNTVDVSS NSGEQQNHVM EEHEMKDEED AEELGESLFP GTYEILQLEK 240 EEILAPHTHF CTICGKGFKR DANLRMHMRG HGDEYKTPAA LAKPNKESSS EPALIKRYSC 300 PFAGCKRNKD HKKFQPLKTI LCVKNHYKRS HCDKSYICSR CHTKKFSVIA DLKTHEKHCG 360 KDKWLCSCGT TFSRKDKLFG HIALFQGHTP AIPLDETKGP IAPSDPGDGS EATNVVGSMN 420 FFNFGSENGV DVKGSLDDPA AYFSPLNFET CNFGGFHEFP RPASDDSETS LAFLLSGTCS 480 YNNNNNNDVE RS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots (e.g. root tips and lateral roots), leaves, flowers (e.g. stigma, sepal, anther, and filament), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ527163 | 1e-159 | HQ527163.1 Gossypium herbaceum clone NBRI_D2_2116 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012482345.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
Swissprot | Q9C8N5 | 0.0 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A0D2SCC1 | 0.0 | A0A0D2SCC1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G075000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6977 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 0.0 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G075000.1 |
Entrez Gene | 105796994 |