PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G071400.3

Common Name

B456_005G071400, LOC105796957

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 915aa MW: 102384 Da PI: 8.4451

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G071400.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	38.7	2.6e-12	79	108	49	78
EEETTT--SS--S-STTTT-------S--- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkkqa 78 ++ efDe+krsCrrrLa+hn+rrrk+++ Gorai.005G071400.3 79 VNSVVEFDEGKRSCRRRLAGHNRRRRKTHP 108 56789**********************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	9.545	25	106	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.4E-5	79	105	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.26E-8	80	110	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	5.11E-7	680	795	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.9E-6	683	799	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.29E-7	684	795	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 915 aa Download sequence Send to blast
MLVPLSCNLE DRFTLSWMRM LSVGRKPRLL GLLVVQFVRW RIVGLILAKP RIIIDGIKFV 60 MCILRPLKHW WEMLCSASVN SVVEFDEGKR SCRRRLAGHN RRRRKTHPDN LPTANSLNDE 120 RNSSFLLISL LRILSSMHSN NSDQAKDQDL VAHLLRSLAN VACSTNGRNL SGFLQGFHGA 180 ANAGRSLGNL EKPTDVVSGS TEHVRPSGSA SKIDDCANLA EWQGAMGYCG TVPTSDLAHR 240 RANNDAQDGI LSGSPSRTLI WSGAGFQPRA SETGDTVERI RIDKIDLNNV YDDSQDYVEN 300 LERSLVLKNP VNGSLHSSVG VPESLKSSPP QLSKKSDLTP SQSPSTSGGE AQSRTDRIVF 360 KLFGKNPNDF PIALRRQILE WLSHSPADIE SYIRPGCIIL TIYLRLRESA WEELCYDLGS 420 SLRKLVDVSN DSFWKTGWVY ARVQHSVAFI YNGRVVLDAP LPLKSHRNCK ISSIKPIAVS 480 VTERAQFVVK GFNLNQSSTR LLCAVEGKYL VQETCYDLMD AVDPINEQDK LQHLCFLCSI 540 PNVSGRGFIE VEDFGLSSTF FPFIVAEQEV CSEICTLEGV IETAVPTVDI NKKEEKMEIR 600 NQALDFIHEM GWLLHRNHLN RKLGDMNPNL NLFPFRRFKW LMEFSMDHDW CAVVKKLLGI 660 LFDGTVDLGD HSSMEFALLD MCLLHRAVRR NCRPMVELLL RYVPNEVLDK PGSKQKLSVD 720 GNDYGFMFKP NVVGPAGLTP LHMVASREGC ENVLDALTDD PGLVAIEAWK SAQDSTGLTP 780 NDYARLQGHY SYIHLVQRKI NKKSECGYIV LDIPGTPLDC NSKQKLSDGT RSAMAVSLEI 840 QKIKKKARQD GCKACEKKLA YGNRRTSLVY RPTMLSMVAI AAVCVCVALL FKSSPEVLYV 900 FRPFRWELLK YGSS*

Sequence ? help Back to Top

Protein Sequence Length: 915 aa Download sequence Send to blast

MLVPLSCNLE DRFTLSWMRM LSVGRKPRLL GLLVVQFVRW RIVGLILAKP RIIIDGIKFV  60
MCILRPLKHW WEMLCSASVN SVVEFDEGKR SCRRRLAGHN RRRRKTHPDN LPTANSLNDE  120
RNSSFLLISL LRILSSMHSN NSDQAKDQDL VAHLLRSLAN VACSTNGRNL SGFLQGFHGA  180
ANAGRSLGNL EKPTDVVSGS TEHVRPSGSA SKIDDCANLA EWQGAMGYCG TVPTSDLAHR  240
RANNDAQDGI LSGSPSRTLI WSGAGFQPRA SETGDTVERI RIDKIDLNNV YDDSQDYVEN  300
LERSLVLKNP VNGSLHSSVG VPESLKSSPP QLSKKSDLTP SQSPSTSGGE AQSRTDRIVF  360
KLFGKNPNDF PIALRRQILE WLSHSPADIE SYIRPGCIIL TIYLRLRESA WEELCYDLGS  420
SLRKLVDVSN DSFWKTGWVY ARVQHSVAFI YNGRVVLDAP LPLKSHRNCK ISSIKPIAVS  480
VTERAQFVVK GFNLNQSSTR LLCAVEGKYL VQETCYDLMD AVDPINEQDK LQHLCFLCSI  540
PNVSGRGFIE VEDFGLSSTF FPFIVAEQEV CSEICTLEGV IETAVPTVDI NKKEEKMEIR  600
NQALDFIHEM GWLLHRNHLN RKLGDMNPNL NLFPFRRFKW LMEFSMDHDW CAVVKKLLGI  660
LFDGTVDLGD HSSMEFALLD MCLLHRAVRR NCRPMVELLL RYVPNEVLDK PGSKQKLSVD  720
GNDYGFMFKP NVVGPAGLTP LHMVASREGC ENVLDALTDD PGLVAIEAWK SAQDSTGLTP  780
NDYARLQGHY SYIHLVQRKI NKKSECGYIV LDIPGTPLDC NSKQKLSDGT RSAMAVSLEI  840
QKIKKKARQD GCKACEKKLA YGNRRTSLVY RPTMLSMVAI AAVCVCVALL FKSSPEVLYV  900
FRPFRWELLK YGSS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269\|PubMed:10524240}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622309	0.0	KJ622309.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012482282.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1 isoform X2
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A0D2SC53	0.0	A0A0D2SC53_GOSRA; Uncharacterized protein
STRING	Gorai.005G071400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Phytozome	Gorai.005G071400.3
Entrez Gene	105796957

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]