PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.005G071400.2 | ||||||||
Common Name | B456_005G071400, LOC105796957 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 1041aa MW: 115752 Da PI: 7.8502 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.1 | 1.7e-40 | 157 | 234 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Gorai.005G071400.2 157 VCQVEDCRADLSKAKDYHRRHKVCDVHSKATKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 234 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.0E-31 | 155 | 219 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.077 | 155 | 232 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.83E-37 | 156 | 236 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-28 | 158 | 231 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 3.18E-7 | 806 | 937 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.5E-6 | 809 | 925 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.68E-7 | 810 | 921 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1041 aa Download sequence Send to blast |
MEGKFGGKPR HFYGPTASDL KAAEKKSVEW DLNDWKWDGD LFTATPLNPV PSDCRSRQLF 60 PDGSETAPNA GSSHSSSSCS EHSSPGNEKG KRKMQNKKRA VVVLDDDDDN DDDDDDGVKG 120 DAGSLKLQLG GQVYPIMDED AKCGKKTKVT GTPCRAVCQV EDCRADLSKA KDYHRRHKVC 180 DVHSKATKAL VGNVMQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR KTHPDNLPTA 240 NSLNDERNSS FLLISLLRIL SSMHSNNSDQ AKDQDLVAHL LRSLANVACS TNGRNLSGFL 300 QGFHGAANAG RSLGNLEKPT DVVSGSTEHV RPSGSASKID DCANLAEWQG AMGYCGTVPT 360 SDLAHRRANN DAQDGILSGS PSRTLIWSGA GFQPRASETG DTVERIRIDK IDLNNVYDDS 420 QDYVENLERS LVLKNPVNGS LHSSVGVPES LKSSPPQLSK KSDLTPSQSP STSGGEAQSR 480 TDRIVFKLFG KNPNDFPIAL RRQILEWLSH SPADIESYIR PGCIILTIYL RLRESAWEEL 540 CYDLGSSLRK LVDVSNDSFW KTGWVYARVQ HSVAFIYNGR VVLDAPLPLK SHRNCKISSI 600 KPIAVSVTER AQFVVKGFNL NQSSTRLLCA VEGKYLVQET CYDLMDAVDP INEQDKLQHL 660 CFLCSIPNVS GRGFIEVEDF GLSSTFFPFI VAEQEVCSEI CTLEGVIETA VPTVDINKKE 720 EKMEIRNQAL DFIHEMGWLL HRNHLNRKLG DMNPNLNLFP FRRFKWLMEF SMDHDWCAVV 780 KKLLGILFDG TVDLGDHSSM EFALLDMCLL HRAVRRNCRP MVELLLRYVP NEVLDKPGSK 840 QKLSVDGNDY GFMFKPNVVG PAGLTPLHMV ASREGCENVL DALTDDPGLV AIEAWKSAQD 900 STGLTPNDYA RLQGHYSYIH LVQRKINKKS ECGYIVLDIP GTPLDCNSKQ KLSDGTRSAM 960 AVSLEIQKIK KKARQDGCKA CEKKLAYGNR RTSLVYRPTM LSMVAIAAVC VCVALLFKSS 1020 PEVLYVFRPF RWELLKYGSS * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-30 | 157 | 231 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ622309 | 0.0 | KJ622309.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012482280.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 1 isoform X1 | ||||
Refseq | XP_012482281.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 1 isoform X1 | ||||
TrEMBL | A0A0D2RGS7 | 0.0 | A0A0D2RGS7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G071400.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.005G071400.2 |
Entrez Gene | 105796957 |
Publications ? help Back to Top | |||
---|---|---|---|
|