PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G068900.1 | ||||||||
Common Name | B456_005G068900, LOC105796924 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 302aa MW: 34233 Da PI: 6.7076 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.5 | 7.2e-19 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl Gorai.005G068900.1 24 RGPWTVEEDFKLINYIAIHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 71 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.4 | 2.5e-16 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Gorai.005G068900.1 77 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 120 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.787 | 19 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.33E-31 | 21 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-15 | 23 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-16 | 24 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-23 | 25 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.56E-13 | 26 | 71 | No hit | No description |
PROSITE profile | PS51294 | 23.502 | 72 | 126 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 76 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-15 | 77 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-23 | 79 | 125 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MDGKKRGCTG NVQSEEDHEM DLIRGPWTVE EDFKLINYIA IHGEGRWNSL ARCAGLKRTG 60 KSCRLRWLNY LRPDIRRGNI TLEEQLLILE LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT 120 RVQKHAKQLK CDVNSKQFKD TMRYLWMPRL VERIQAAAGS TTTTTTTTAV VPSASVMGKD 180 FSTHVTPSYT SENSSTATAA SSESFEAQVS PVSDLTNCYN NGFQVTNNNN PNPDYNFQAC 240 SSQVDYYEHS LSAANYYNHG DGGCLDLQTN NYPMLDGADL SDNLLNAEDF LFLQQQFNFN 300 M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 21 | 124 | 4 | 106 | B-MYB |
1gv2_A | 1e-25 | 21 | 118 | 1 | 97 | MYB PROTO-ONCOGENE PROTEIN |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012482236.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q9FGY3 | 1e-89 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | A0A0D2SBZ9 | 0.0 | A0A0D2SBZ9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G068900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 4e-87 | myb domain protein 78 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G068900.1 |
Entrez Gene | 105796924 |
Publications ? help Back to Top | |||
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