PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G068900.1
Common NameB456_005G068900, LOC105796924
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 302aa    MW: 34233 Da    PI: 6.7076
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G068900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.57.2e-192471148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd +l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Gorai.005G068900.1 24 RGPWTVEEDFKLINYIAIHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 71
                        89********************************************97 PP

2Myb_DNA-binding51.42.5e-1677120146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Gorai.005G068900.1  77 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 120
                         7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.7871971IPR017930Myb domain
SuperFamilySSF466893.33E-3121118IPR009057Homeodomain-like
SMARTSM007171.1E-152373IPR001005SANT/Myb domain
PfamPF002491.0E-162471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-232578IPR009057Homeodomain-like
CDDcd001673.56E-132671No hitNo description
PROSITE profilePS5129423.50272126IPR017930Myb domain
SMARTSM007171.3E-1476124IPR001005SANT/Myb domain
PfamPF002495.0E-1577120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-2379125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDGKKRGCTG NVQSEEDHEM DLIRGPWTVE EDFKLINYIA IHGEGRWNSL ARCAGLKRTG  60
KSCRLRWLNY LRPDIRRGNI TLEEQLLILE LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT  120
RVQKHAKQLK CDVNSKQFKD TMRYLWMPRL VERIQAAAGS TTTTTTTTAV VPSASVMGKD  180
FSTHVTPSYT SENSSTATAA SSESFEAQVS PVSDLTNCYN NGFQVTNNNN PNPDYNFQAC  240
SSQVDYYEHS LSAANYYNHG DGGCLDLQTN NYPMLDGADL SDNLLNAEDF LFLQQQFNFN  300
M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25211244106B-MYB
1gv2_A1e-2521118197MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482236.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ9FGY31e-89MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A0D2SBZ90.0A0A0D2SBZ9_GOSRA; Uncharacterized protein
STRINGGorai.005G068900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.14e-87myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]