PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G065700.1

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CAMTA

Protein Properties

Length: 911aa MW: 102757 Da PI: 7.7671

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G065700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	164.1	2.4e-51	29	146	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 l+e k+rwl+++ei+aiL n++ +++++++ + pksg+++L++rk++r+frkDGy+wkkkkdgkt++E+he+LKvg e +++yYah+e+n Gorai.005G065700.1 29 LEEaKSRWLRPNEIHAILCNHRYFSIQAKPVNMPKSGTIVLFDRKMLRNFRKDGYNWKKKKDGKTIKEAHEHLKVGDKERIHVYYAHGEDN 119 55669************************************************************************************ PP CG-1 92 ptfqrrcywlLeeelekivlvhylevk 118 +tf rrcywlL+++le+ivlvhy+e+k Gorai.005G065700.1 120 STFVRRCYWLLDKSLEQIVLVHYRETK 146 **********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	73.998	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.1E-73	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	8.6E-46	31	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	2.38E-12	358	443	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	1.03E-18	519	654	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.1E-18	526	656	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.582	528	665	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	5.5E-9	536	623	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.31E-16	549	653	No hit	No description
PROSITE profile	PS50088	11.968	594	626	IPR002110	Ankyrin repeat
SMART	SM00248	6.0E-6	594	623	IPR002110	Ankyrin repeat
SMART	SM00248	1700	633	662	IPR002110	Ankyrin repeat
SMART	SM00015	380	704	726	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	110	738	760	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.614	742	768	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0018	780	802	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.78	781	805	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	4.2E-4	782	802	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	69	860	882	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.785	863	889	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 911 aa Download sequence Send to blast
MEDGGCARLV GAEIHGFHTL QDLDVKNMLE EAKSRWLRPN EIHAILCNHR YFSIQAKPVN 60 MPKSGTIVLF DRKMLRNFRK DGYNWKKKKD GKTIKEAHEH LKVGDKERIH VYYAHGEDNS 120 TFVRRCYWLL DKSLEQIVLV HYRETKEVSL ATHSNSSSLT DQSTPLLVTE EFDSGIANTY 180 SEEPGESVNV RNHEMKLLEI NTLEWDELLV ANGANDSIAS RGDNVSCFDQ QNQMAVNDFS 240 NYGGLISAHN LSTETSLLVN SIAPVAQSNN AYLGTTGGVC NQISGGQVNT TSQLKDSCAL 300 GIGDSLDFLV NHGLQSQDSF GKWINDFITE PLGSVGDSVL ELSSANDSFT SPEQIFSITE 360 VSPGWAYSTE KTKILVTGVF HQAYQHLAKS TLFCVCGDLC TPAEIVQVGV YRCLLSQHSP 420 GLVNLYMSLD GHKPISQVLG FEYCTPLSHD RIFPTEDESR QEEFQLQMRL AYLLFSTSKS 480 LDILLGNKVS PNILKGVKKF AQKTTNMSDC WKYLMKSFEE NRVSSTQAKD SLLEIALKNR 540 LRDWLLERII EGGKTNEHDT QGQGVLHLCA ILGYTWAMYL YSWSGLSLDF RDKHGWTALH 600 WAAFYGREKM VAVLLSAGAK PNLVTDPTTR NPNGYTAADL ASLKGYEGLA AYLSEEALVA 660 HFNDMAVAGN ASGSLQTSRT EATNSENLNE DELYLKESLA AYRTAADAAS RIQTAFRVHS 720 LKLRTKAIES SHPEDETRNI VAAMKIQHAF RNYEIKKKMT AAARIQYSFL TWKMRKDFLN 780 MRRQAIKIQA VFRGFQVRRQ YHKILWSVGV LEKAILRWRF KRKGLRGLQI NTAEEVAQRS 840 QESDTEEGFF RDGRKQAEER VVKAVVRVQT LFRSKKAQQE YRRMKLAHDM AKLEYENLRG 900 LPSDMDACRH *

Sequence ? help Back to Top

Protein Sequence Length: 911 aa Download sequence Send to blast

MEDGGCARLV GAEIHGFHTL QDLDVKNMLE EAKSRWLRPN EIHAILCNHR YFSIQAKPVN  60
MPKSGTIVLF DRKMLRNFRK DGYNWKKKKD GKTIKEAHEH LKVGDKERIH VYYAHGEDNS  120
TFVRRCYWLL DKSLEQIVLV HYRETKEVSL ATHSNSSSLT DQSTPLLVTE EFDSGIANTY  180
SEEPGESVNV RNHEMKLLEI NTLEWDELLV ANGANDSIAS RGDNVSCFDQ QNQMAVNDFS  240
NYGGLISAHN LSTETSLLVN SIAPVAQSNN AYLGTTGGVC NQISGGQVNT TSQLKDSCAL  300
GIGDSLDFLV NHGLQSQDSF GKWINDFITE PLGSVGDSVL ELSSANDSFT SPEQIFSITE  360
VSPGWAYSTE KTKILVTGVF HQAYQHLAKS TLFCVCGDLC TPAEIVQVGV YRCLLSQHSP  420
GLVNLYMSLD GHKPISQVLG FEYCTPLSHD RIFPTEDESR QEEFQLQMRL AYLLFSTSKS  480
LDILLGNKVS PNILKGVKKF AQKTTNMSDC WKYLMKSFEE NRVSSTQAKD SLLEIALKNR  540
LRDWLLERII EGGKTNEHDT QGQGVLHLCA ILGYTWAMYL YSWSGLSLDF RDKHGWTALH  600
WAAFYGREKM VAVLLSAGAK PNLVTDPTTR NPNGYTAADL ASLKGYEGLA AYLSEEALVA  660
HFNDMAVAGN ASGSLQTSRT EATNSENLNE DELYLKESLA AYRTAADAAS RIQTAFRVHS  720
LKLRTKAIES SHPEDETRNI VAAMKIQHAF RNYEIKKKMT AAARIQYSFL TWKMRKDFLN  780
MRRQAIKIQA VFRGFQVRRQ YHKILWSVGV LEKAILRWRF KRKGLRGLQI NTAEEVAQRS  840
QESDTEEGFF RDGRKQAEER VVKAVVRVQT LFRSKKAQQE YRRMKLAHDM AKLEYENLRG  900
LPSDMDACRH *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012482170.1	0.0	PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
Refseq	XP_012482171.1	0.0	PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A1U8JLL1	0.0	A0A1U8JLL1_GOSHI; calmodulin-binding transcription activator 5-like isoform X1
STRING	Gorai.005G065700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4021	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Gorai.005G065700.1

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]