PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G065300.1
Common NameB456_005G065300, LOC105796884
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 157aa    MW: 16999.4 Da    PI: 10.6102
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G065300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.68.6e-193872135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  Gorai.005G065300.1 38 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 72
                        ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.13E-133172No hitNo description
SMARTSM004015.1E-133283IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.8E-163672IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.68E-123772No hitNo description
PROSITE profilePS5011412.073868IPR000679Zinc finger, GATA-type
PfamPF003209.6E-173872IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403863IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MLDPSEKGSS SEDQTKKSPE WISPKGSPNQ SIETKKVCAD CGTSKTPLWR GGPAGPKSLC  60
NACGIRSRKK RRAILGLNKG EDKKSKKGNI NGNNYNRKSS SSNTKNLGDN LKQRLLSLGK  120
EVLMQRSKVE KQRSKLGEEE QAAVLLMALS YGSVYA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5273715e-40HQ527371.1 Gossypium herbaceum clone NBRI_B_EYI1BW404JXTVQ simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482165.11e-108PREDICTED: GATA transcription factor 15-like
SwissprotQ8LG102e-48GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A0D2RA281e-107A0A0D2RA28_GOSRA; Uncharacterized protein
TrEMBLA0A2P5S6591e-107A0A2P5S659_GOSBA; Uncharacterized protein
STRINGGorai.005G065300.11e-108(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.19e-48GATA transcription factor 15
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  4. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]