PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G058900.4 | ||||||||
Common Name | B456_005G058900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 1031aa MW: 115091 Da PI: 9.5404 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35 | 3.4e-11 | 47 | 82 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WT+eE e++++a +++G++ Wk++a ++ +R+ +++ Gorai.005G058900.4 47 QWTKEELERFYEAYRKYGKD-WKKVATMIR-NRSVEMV 82 6*****************99.*********.**98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.626 | 43 | 96 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 3.36E-11 | 44 | 91 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-6 | 44 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-9 | 47 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-5 | 47 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.61E-7 | 48 | 82 | No hit | No description |
Pfam | PF06584 | 6.0E-33 | 636 | 736 | IPR033471 | DIRP domain |
SMART | SM01135 | 6.0E-56 | 636 | 737 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1031 aa Download sequence Send to blast |
MAPSRKSKSV NKKFSYVNEV ASIKDGDSSA KRSGKRKRKL SDMLGPQWTK EELERFYEAY 60 RKYGKDWKKV ATMIRNRSVE MVEALYTMNR AYLSLPEGTA SVVGLIAMMT DHYSVMGGSD 120 SEQESNEGMG ISRKPQKRSR GKIRDQPSKS SDKPLPDLLQ FPSANSGCLS LLKRRRSESR 180 PRAVGKRTPR VPISFSHDKN KGERYFSPIR QGMKLKVDAV DDDVAHEVAL ALTEASQRGG 240 SPQVSRTPNR KAETPSPVIN SERMNADSET TSAKIHGSEV DEDACELSLG STEADNADYA 300 KDKNYSRNIE GTGTVEVQQK GKRYYRRKPE IEESVNHQED TKEACSGTEE GQQLCDFKGN 360 FDCEVEDAKT SRASIKGPRK RSKKVLFEGV EDTAFDALQT LADLSLMMPE TADTESSVQH 420 KEEKNEVEKT KLKGNHLVPG AKGCASKASR HGKLFGHDVR ANPEAKEAHP ANVGMRKRRQ 480 KSSPYKLQIP KDETDADSQL GESPNIEASG EVKNLLSKGK LSNNVGHPKQ GKFVRPPEHA 540 SSSTDQGRDL NNLAPSTIQV SSVNQVNLPT KIRSKRKTDV REPAIRKGIK SSDNIVKGKI 600 SGPVTLFHDG ALDLKEKLCN FLCSYRARRW CAFEWFYSTI DYPWFAKREF VEYLDHVGLG 660 HIPRLTRVEW GVIRSSLGKP RRFSEQFLKE EREKLNQYRE SVRRHYAELR AGIGEGLPTD 720 LARPLSVGQR VIAVHPKIRE IHDGSVLTVD YSRYRIQFDS PELGVEFVMD VDCMPLNPME 780 NLPASLSRQN AAIRKFVENY NELKMNGQSK ESKMEENIKF MQCDNLENAN SPSRTSPSTF 840 SVGNLSQPVK VDSSSPNLQL KIGPTETVYT QAINSQPSAV SLVQAREADV EALSQLTRAL 900 DKKEAIVSEL RRMNDEVLEN QKGGDNHIKD SDSFKKQYAA VLLQLNEVNE QVSSALLCLR 960 QRNTYQGTSS GKLLNPSGKI GEQGSQLSSF DAMHHVQESV SHVAEIVESS RRKARSMVDA 1020 ALKVKQGIDD * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 474 | 479 | MRKRRQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269|PubMed:15246533}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012482094.1 | 0.0 | PREDICTED: protein ALWAYS EARLY 3 isoform X1 | ||||
Swissprot | Q6A332 | 0.0 | ALY3_ARATH; Protein ALWAYS EARLY 3 | ||||
TrEMBL | A0A0D2PNB1 | 0.0 | A0A0D2PNB1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G058900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G058900.4 |
Publications ? help Back to Top | |||
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