PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G058800.1
Common NameB456_005G058800, LOC105796091
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 460aa    MW: 49213.3 Da    PI: 7.9244
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G058800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-114467326
                        S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                        ++ C +++rtG+C yG+rC+F+H+
  Gorai.005G058800.1 44 EADCIYYLRTGFCGYGSRCRFNHP 67
                        689********************8 PP
2zf-CCCH38.22.5e-1290114327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C++++rtGtC++G++Ck++H++
  Gorai.005G058800.1  90 QPVCQYYMRTGTCRFGSSCKYHHPK 114
                         689********************96 PP
3zf-CCCH39.11.2e-12136159326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         +++C+++++tG Ck+G++C+F+H+
  Gorai.005G058800.1 136 EKECSYYMKTGRCKFGATCRFHHP 159
                         689********************8 PP
4zf-CCCH37.83.2e-12294317326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         +++C+++++tG Ck+G++Ck++H+
  Gorai.005G058800.1 294 QPECQYYLKTGDCKFGSSCKYHHP 317
                         799********************9 PP
5zf-CCCH27.45.7e-09340364327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++C ++++   Ck+G+ CkF H++
  Gorai.005G058800.1 340 APPCTHYSQHAVCKFGPACKFDHPM 364
                         689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.9E-64168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1924169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-64470IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-94467IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-54767IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-787114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.27787115IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-1090114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-690115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-592113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549133161IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5133160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6134161IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-10136159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-5139159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817291319IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5291318IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6294319IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9294317IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4297317IPR000571Zinc finger, CCCH-type
SMARTSM003560.0032337364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.779337365IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6340364IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5341368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4342367IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MEWGPESDLE PEWTSSGPET GLEEPIPRLE LGVEPKSYPK RPNEADCIYY LRTGFCGYGS  60
RCRFNHPHDR AMVMGPGISS IGEYPERAGQ PVCQYYMRTG TCRFGSSCKY HHPKDGGGFV  120
IHVPLNSYGY PLRLGEKECS YYMKTGRCKF GATCRFHHPI SSVVQVSTPY STPQVPHVPT  180
PTLYSTVQSP SSLSSQQYGV VMARPPLMPG SYVQGPYGSL LLSPSMVSFP SWNPYPGLVN  240
SSTQTSVGSR SVFGGTPLSP LAPAYTRSYQ LVSSSVGSSS SNRKEQLFPE IPNQPECQYY  300
LKTGDCKFGS SCKYHHPLEV VAPKSDVILS TLGLPLRPGA PPCTHYSQHA VCKFGPACKF  360
DHPMEQLSYS PSTSSLSDIP VGSTIATLAP SSDLRPKLLS GSGKDSDPAV MSSSVSSSSE  420
SIGLVFSEGA AIPPSSTQQS GPSSGPSAGS GITKAHTSN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481175.10.0PREDICTED: zinc finger CCCH domain-containing protein 58
SwissprotQ6NPN31e-140C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A0D2RG900.0A0A0D2RG90_GOSRA; Uncharacterized protein
STRINGGorai.005G058800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-134C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]